LOC113533125 (LOC108265174)


Basic Information

Item Value
gene id LOC113533125
gene name LOC108265174
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 19398738 ~ 19404045 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306322.1
GATGAAACTGCAGTATTTTTTGATCATCAAGAAAGATTTACAACAATTTTGGTGTCTCTGGTGGGACCGTGATGTTCTCCGTCCATGTGCTGTGACAACCCAGATGACAGACAACATCTGATCTGATCCGGTGATCCTGTTTCTGTGCTTCTGTGACAAACATATGCCAGCTCAGGTGAGTGGGTCATCCTGTCAAAGAACTTGCTAGATGACAGAATCAGTTTGATGATAAGAGTTCGACTGATAGGAGTTCAGTTGAAGTTTCTCTGTGCGGAATGGCAACGAGTCATCAGGATCCTAAGGGTGTTGGAGAGTCTTCCTCACCAGTTTGGGTCAAATTGGAAAATGGCAAAACCAAAGatgaagctgtttatttttcttatccTTTTTGGTGTTCTAACTGTTATCTTCATTTCAAAATGGAACCATAATTTCAGGCATGCTGCTGTTTACATCGCTGGAAATCTGTATTGGGGCACACCATCATCTATAAGCAGTAGTTTGGATATACACAATACCCCCATATCTATGAAGTCTATAATCCCCATTAAAAACTCAAGCCATTTTGCAGTGTCTGCATTCATTGATCACAGGATCAGTAAAGCTATTCGAGTTATCAgcataataaaaagaaacagcatGCAGCCACTTTATTGCTTCTACTGCAACAATGACCGAGCTTGCGAGTCTACTATGGCTAAAATTGAGATACACAGTGATCATTTTGACTTCCCATTTGGTGCTTCAGATGTGCTGTGCCAGGGCAAACACACCCAAAATGCGACTCATGTCGCCATTTCAGCTGAAATTTCAGACAATAATAACCTAGACTTCCTGCCAGTAAAGAACAGAGTGAATAATGAATCATTCAAGTACAACTTCACCATCTGTATCTCAAGTCTTTTTGGGGACTACAATAATGTTCTGCAGTTTGCTCAAAGCATGGAGATGTACAAGCTTCTTGGTGTCCAACGAGTCGTAATCTACAACACCAGCTGTGGTTCTGACTTGGACAAACTCCTACAGCACTATGAGAAAGAAGGAATTCTAGAGATTGTGCCATGGCCTATTGACCAGTTCCTTAATCCATCTGCAGGATGGCATGCCAAATTGCATAAAGGGGAACTCCAGTACTATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATGAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGCCCTATAAATACGCTAACCTTGCTTTACTGATGGAGGATCTGCAACAGGAGCACAGATATGTGACTGTATTTATCATAGAGAACCACATCTTCCCCAAGACACAGTTTGAAGAAAGTGGCAAGTTTCGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTTCAACCCAACAAAGATGATCATCAACCCGAGGAACATGATGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCACGTGAGAACACCACTACAGGGGAGTCTTACCAAGGAGCAATTAATTGTTGACACAAGAGTGTGGGACTTTGCACAAGAACTGATAACAAATGTTAATAGGGCACTAAAATTATCAGGTTTGTTGAAAAGTCAAAAGTGATATGGGTTTTtggtttgtctgtttattttttcttttggtgctctgaaaaaaaaaaaaagaaacaaattacaAGGAATTCTAGCAAGGGAATGAGTTTGTtgaatttcattaaaaagttCTAAGAACAGAAACTTGGCTGTTTTTAACTTTACATGGTTGGCATACTAGTTTGTATGAGTAAATTATGCTCAGGTCATGCTGTGTGTAATAggacacatttacattacatttagtGCTGTAATTTactctcaccatccactttattaggaacacctgtacacctgcccaTACATGTCGTTATCTAATCACTTATTCATGCAGCACCAGCGCAAtgcaaacattaataaaacattaataaaacattaactcAGCGTGTATGCACTAGCTGTACCCAACATAGGTGgatagataaatatatagaataaagctgttgtttggttttatcttttatctacTCCAGAGGCTGATTTGAAATT
>XM_034306323.1
GATGAAACTGCAGTATTTTTTGATCATCAAGAAAGATTTACAACAATTTTGGTGTCTCTGGTGGGACCGTGATGTTCTCCGTCCATGTGCTGTGACAACCCAGATGACAGACAACATCTGATCTGATCCGGTGATCCTGTTTCTGTGCTTCTGTGACAAACATATGCCAGCTCAGGGGTCAAATTGGAAAATGGCAAAACCAAAGatgaagctgtttatttttcttatccTTTTTGGTGTTCTAACTGTTATCTTCATTTCAAAATGGAACCATAATTTCAGGCATGCTGCTGTTTACATCGCTGGAAATCTGTATTGGGGCACACCATCATCTATAAGCAGTAGTTTGGATATACACAATACCCCCATATCTATGAAGTCTATAATCCCCATTAAAAACTCAAGCCATTTTGCAGTGTCTGCATTCATTGATCACAGGATCAGTAAAGCTATTCGAGTTATCAgcataataaaaagaaacagcatGCAGCCACTTTATTGCTTCTACTGCAACAATGACCGAGCTTGCGAGTCTACTATGGCTAAAATTGAGATACACAGTGATCATTTTGACTTCCCATTTGGTGCTTCAGATGTGCTGTGCCAGGGCAAACACACCCAAAATGCGACTCATGTCGCCATTTCAGCTGAAATTTCAGACAATAATAACCTAGACTTCCTGCCAGTAAAGAACAGAGTGAATAATGAATCATTCAAGTACAACTTCACCATCTGTATCTCAAGTCTTTTTGGGGACTACAATAATGTTCTGCAGTTTGCTCAAAGCATGGAGATGTACAAGCTTCTTGGTGTCCAACGAGTCGTAATCTACAACACCAGCTGTGGTTCTGACTTGGACAAACTCCTACAGCACTATGAGAAAGAAGGAATTCTAGAGATTGTGCCATGGCCTATTGACCAGTTCCTTAATCCATCTGCAGGATGGCATGCCAAATTGCATAAAGGGGAACTCCAGTACTATGGCCAGTTGGTAACACTCAATGAGTGCATTTATAGACATATGTATGAGTCCAAATATGTCCTGTTGAATGACATTGATGAGATCATCATGCCCTATAAATACGCTAACCTTGCTTTACTGATGGAGGATCTGCAACAGGAGCACAGATATGTGACTGTATTTATCATAGAGAACCACATCTTCCCCAAGACACAGTTTGAAGAAAGTGGCAAGTTTCGCAGGCCAGAATGGAAAAATATTCCTGGTATCAATATTATGGAACACATTTACAGAGAACCAGACAGAAAGAACATCTTCAACCCAACAAAGATGATCATCAACCCGAGGAACATGATGCAAACCTCAGTGCATTCCAGCCTGCAACACATTGGAAAGGTCTATCGGGTTCCTCCCGATGTGTGTAGGATCATTCACGTGAGAACACCACTACAGGGGAGTCTTACCAAGGAGCAATTAATTGTTGACACAAGAGTGTGGGACTTTGCACAAGAACTGATAACAAATGTTAATAGGGCACTAAAATTATCAGGTTTGTTGAAAAGTCAAAAGTGATATGGGTTTTtggtttgtctgtttattttttcttttggtgctctgaaaaaaaaaaaaagaaacaaattacaAGGAATTCTAGCAAGGGAATGAGTTTGTtgaatttcattaaaaagttCTAAGAACAGAAACTTGGCTGTTTTTAACTTTACATGGTTGGCATACTAGTTTGTATGAGTAAATTATGCTCAGGTCATGCTGTGTGTAATAggacacatttacattacatttagtGCTGTAATTTactctcaccatccactttattaggaacacctgtacacctgcccaTACATGTCGTTATCTAATCACTTATTCATGCAGCACCAGCGCAAtgcaaacattaataaaacattaataaaacattaactcAGCGTGTATGCACTAGCTGTACCCAACATAGGTGgatagataaatatatagaataaagctgttgtttggttttatcttttatctacTCCAGAGGCTGATTTGAAATTGATGATTACTGAATTCTGAatattcatttacttatttatttatttttttacctttttaattGCTGGAGCTGAACAAAATCATGCCTatgattaacattttaatatagctgctttaatagtatagtatataataatagCATAGGCAATATTGGCATTTTGAAAGAATTTTTCAGCCTGTTtcagaaagaaatatttaaatgtgtttttaccTAAACTCCTGTGTCGTGATGTTCTAAACATGCTGTGTACTTATTTCAAACTAGGGGAGAGTGATATGACTTTTTACATCATGAAAGATTAAAATGGCCCCATCTGTAAAATGCATCTcaatcttttttcccccagattgCATGTACTGTTGTACTGAAAATACTCAGACATGACATCGCAAGTTATTTTATGAGCAAGACTTTGCTCGATTAGCGTTCTCCCTGACAGTAATAACCAAAAGTAGGCAGTTCTTTAGCTTATGTTTCCTCTTCATTGTATTTGGAAACATGGAAGCATAGCTGTAATTGTATGCAAAATAAGCAAAGGCAAGACGGACAGGTCGGGGAAACGCTACAAATGTGTTTAAGCACAAAAGCCAGAAGCAGTGCTGAAGTACACAAAGGTGTTTGAAAAAAGGCACTTTTTGTGAGAGAGACATCAAATAATTTTCTAACATTGCCATTCCACAGCTCTACACTGAATGCTGTAAAAACTGAAACAGTGAAACACAATTTGCTTAAAATAAtctcatttatattttgttgggaaatgtttattcaaatttgttttgtcaatttttaaatgttaacacTTTTTAATTGTTAAGTGCCAGAGAGTGTAGTTTGtgatatctgtgtgtatgtgtgtgcacgtgtgtgttttcattGATGTTGTATCAAACTTTGCTGTTTTTAACTTTACATGGTTGGCATACTAATTTGTATGAGTAAATTATGCTGAAATTATTCATATTCCTGCAATCAATATTATAGAACACATTTACAGAGAACCAGAaggaaagaacatcttccaTCCAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108265174

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306322.1 False 2165 mRNA 0.39 2 19398738 19403017
XM_034306323.1 True 3038 mRNA 0.37 2 19398738 19404045

Neighbor

gene id symbol gene type direction distance location
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding upstream 9076 19270626 ~ 19389662 (+)
zbtb34 LOC108265239 coding upstream 134102 19245748 ~ 19264636 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 198633 19143547 ~ 19200105 (+)
vgll4l LOC108265912 coding upstream 1101257 18291489 ~ 18297481 (+)
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding upstream 1123270 18273663 ~ 18275468 (+)
LOC117595725 LOC108265174 coding downstream 14705 19418750 ~ 19419938 (+)
LOC113533274 LOC108265174 coding downstream 80130 19484175 ~ 19489558 (+)
LOC117597842 LOC108265174 coding downstream 97448 19501493 ~ 19502708 (+)
map3k12 map3k12,LOC107715569,LOC107711606,LOC107663586 coding downstream 173957 19578002 ~ 19598056 (+)
stac3 stac3,LOC108265245,LOC108411943,LOC107751515,LOC105894341,LOC107711514 coding downstream 267376 19671421 ~ 19682627 (+)
G135169 NA non-coding upstream 75467 19321962 ~ 19323271 (+)
G135164 NA non-coding upstream 129070 19269334 ~ 19269668 (+)
G135101 NA non-coding upstream 443537 18949227 ~ 18955201 (+)
G135090 NA non-coding upstream 514957 18883368 ~ 18883781 (+)
LOC113533586 NA non-coding upstream 525117 18870417 ~ 18873621 (+)
G135292 NA non-coding downstream 4509 19408554 ~ 19484934 (+)
G135294 NA non-coding downstream 28587 19432632 ~ 19516745 (+)
G135309 NA non-coding downstream 81853 19485898 ~ 19486457 (+)
G135341 NA non-coding downstream 154189 19558234 ~ 19559272 (+)
G135363 NA non-coding downstream 210830 19614875 ~ 19615657 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 716806 18436185 ~ 18681932 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 1349849 18030975 ~ 18048889 (+)
G134341 NA other upstream 2101855 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 2529970 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 2660754 16716133 ~ 16737984 (+)
G135287 LOC108265174 other downstream 83442 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 421753 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 776723 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 818370 20222415 ~ 20442191 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 1340535 20744580 ~ 20747856 (+)

Expression


Co-expression Network