LOC113537824


Basic Information

Item Value
gene id LOC113537824
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25917747 ~ 25919263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306337.1
AtattctgaaaatatattttatgaaaatatccTCATACTCTCTTTTGTCAGCTGAAACATTATAATGATATGATGCGTCAGGTGTATATGGTTGCTCGAGAACTTGTGACAGGTGTTTCGGTGGGAAAAGAACTTTAGGGTATATAAGAAACAAGACGGACTAACATTTTCCATGAAGAAATTCGGGGATCGACATGATGGCTCATGCTTTAAAAGTTCAAGCTGAAATTCACCAGGTGCCTGAGTATCAGGtTACAGCAGAAGAACTAGAGGGTATTAGCCTCACTCAGACGGATCCAGATTTTACACGCGGAATTAATCCTGATGAGTTTGCGAGAGGATCGGGAAGCGACAGTCTCGCCGATGATTTGGATTTGATTCTAACAGGGGCTTCGCCAGCGGTCTCGCGAGATCGCCGCGTTCCCTCCTCTCCTCCGAGAAGCGGAAATGGCGTAATAGAAATATCAACAAAAGTAGCGAGCGTGACACCCATCTTAAAAGCCTGTGACGCGCCTCAGCGAGCGAAGAGACGGAGATTAGTCAGTAAGACAGCGTCTCTAGTGAAGCGATTATTTACAGATTCAGTCGAATCACCCACATGGTCACCCGCGTGTTCAACCAGGGAAGGGGGTCGTGGATCTCAAAGCGTGATTAACgagacCGAAGCGGAGACCGAATCGGATAACGGCCCAGAACCGAATCAGGAAGCCGAGCGATGGCGGAGAGAGCGCCAGAGTCCCACTAGACCTCTGTTTAAGCGCAGGTTTCCTCAACGACGGAATAACGccaacGTCTCTAACCAGGAAGCGAGACCTGAACGGGTCCGTCGGCTGAGAATAGCGCCACCTCTCCGCCAGCACCGTGACAGCGGAATCTTGCGACTCGCCGAAATAACGAGCGATTTGATTCGCGACCTGATTCGTGACTACAGCGCCACGTTTTCTAACGCGTGtgaaaaaggttttgtgtgAAAGGTTTGAATGCATGTCCGTGTCGAGCTATAT
>XM_034306338.1
CAtattctgaaaatatattttatgaaaatatccTCATACTCTCTTTTGTCAGCTGAAACATTATAATGATATGATGCGTCAGGTGTATATGGTTGCTCGAGAACTTGTGACAGGTGTTTCGGTGGGAAAAGAACTTTAGGGTATATAAGAAACAAGACGGACTAACATTTTCCATGAAGAAATTCGGGGATCGACATGATGGCTCATGCTTTAAAAGTTCAAGCTGAAATTCACCAGGTGCCTGAGTATCAGGtTACAGCAGAAGAACTAGAGGGTATTAGCCTCACTCAGACGGATCCAGATTTTACACGCGGAATTAATCCTGATGAGTTTGCGAGAGGATCGGGAAGCGACAGTCTCGCCGATGATTTGGATTTGATTCTAACAGGGGCTTCGCCAGCGGTCTCGCGAGATCGCCGCGTTCCCTCCTCTCCTCCGAGAAGCGGAAATGGCGTAATAGAAATATCAACAAAAGTAGCGAGCGTGACACCCATCTTAAAAGCCTGTGACGCGCCTCAGCGAGCGAAGAGACGGAGATTAGTCAGTAAGACAGCGTCTCTAGTGAAGCGATTATTTACAGATTCAGTCGAATCACCCACATGGTCACCCGCGTGTTCAACCAGGGAAGGGGGTCGTGGATCTCAAAGCGTGATTAACgAGACCGAATCGGATAACGGCCCAGAACCGAATCAGGAAGCCGAGCGATGGCGGAGAGAGCGCCAGAGTCCCACTAGACCTCTGTTTAAGCGCAGGTTTCCTCAACGACGGAATAACGccaacGTCTCTAACCAGGAAGCGAGACCTGAACGGGTCCGTCGGCTGAGAATAGCGCCACCTCTCCGCCAGCACCGTGACAGCGGAATCTTGCGACTCGCCGAAATAACGAGCGATTTGATTCGCGACCTGATTCGTGACTACAGCGCCACGTTTTCTAACGCGTGtgaaaaaggttttgtgtgAAAGGTTTGAATGCATGTCCGTGTCGAGCTATAT
>XM_034306339.1
tattctgaaaatatattttatgaaaatatccTCATACTCTCTTTTGTCAGCTGAAACATTATAATGATATGATGCGTCAGGTGTATATGGTTGCTCGAGAACTTGTGACAGGTGTTTCGGTGGGAAAAGAACTTTAGGGTATATAAGAAACAAGACGGACTAACATTTTCCATGAAGAAATTCGGGGATCGACATGATGGCTCATGCTTTAAAAGTTCAAGCTGAAATTCACCAGGTGCCTGAGTATCAGGtTACAGCAGAAGAACTAGAGGGTATTAGCCTCACTCAGACGGATCCAGGGGCTTCGCCAGCGGTCTCGCGAGATCGCCGCGTTCCCTCCTCTCCTCCGAGAAGCGGAAATGGCGTAATAGAAATATCAACAAAAGTAGCGAGCGTGACACCCATCTTAAAAGCCTGTGACGCGCCTCAGCGAGCGAAGAGACGGAGATTAGTCAGTAAGACAGCGTCTCTAGTGAAGCGATTATTTACAGATTCAGTCGAATCACCCACATGGTCACCCGCGTGTTCAACCAGGGAAGGGGGTCGTGGATCTCAAAGCGTGATTAACgagacCGAAGCGGAGACCGAATCGGATAACGGCCCAGAACCGAATCAGGAAGCCGAGCGATGGCGGAGAGAGCGCCAGAGTCCCACTAGACCTCTGTTTAAGCGCAGGTTTCCTCAACGACGGAATAACGccaacGTCTCTAACCAGGAAGCGAGACCTGAACGGGTCCGTCGGCTGAGAATAGCGCCACCTCTCCGCCAGCACCGTGACAGCGGAATCTTGCGACTCGCCGAAATAACGAGCGATTTGATTCGCGACCTGATTCGTGACTACAGCGCCACGTTTTCTAACGCGTGtgaaaaaggttttgtgtgAAAGGTTTGAATGCATGTCCGTGTCGAGCTATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306337.1 True 1004 mRNA 0.49 7 25917748 25919263
XM_034306338.1 False 993 mRNA 0.49 7 25917747 25919263
XM_034306339.1 False 916 mRNA 0.49 7 25917749 25919263

Neighbor

gene id symbol gene type direction distance location
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 113305 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 214622 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 245847 25666925 ~ 25671900 (+)
b2ml b2m coding upstream 252449 25662794 ~ 25665298 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding upstream 310883 25563821 ~ 25606864 (+)
LOC117595683 NA coding downstream 19383 25938646 ~ 25940631 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 33704 25952967 ~ 25989162 (+)
LOC113546011 LOC108265344 coding downstream 163636 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 177395 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 405153 26324416 ~ 26341597 (+)
G139172 NA non-coding upstream 102706 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 234656 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 466170 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 489559 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 584134 25309905 ~ 25333613 (+)
LOC113546140 NA non-coding downstream 29586 25948849 ~ 25950449 (+)
G139235 LOC108265343 non-coding downstream 113331 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 593629 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 959373 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 971814 26891077 ~ 26894530 (+)
LOC117597866 NA other upstream 940 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 359016 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 783489 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1903966 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2023022 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 480928 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 643557 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 706790 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1263758 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1347912 27267175 ~ 27295337 (+)

Expression


Co-expression Network