LOC117597804


Basic Information

Item Value
gene id LOC117597804
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9599821 ~ 9602488 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306492.1
aaagtttggtgtacctaattttaaaaactgaagtTCATCTCCAAGTTTAATGAATGTTAACGCCTAGATTTCACAGATGGCAGCACATTCCTTTACTATCAAAGATAGAGAATGTTACTTTTTGTAAGCAAGCTAAAAagacaccatttttttttcaacctcaGTATAATCtttgttatataatttaaaCACCAAATGCtatttgtattattacatttattttcatggaaGAAACAACTTATAGACTGATTCCATTTAATCACaccatatttaaaagaaaacttgaATCAATATATTTCAAAGACACTTGCCCCAACAGCaaagaataaaatgtgttcAGTCAGAGCTGTGATGTATCGCCTGTTCCTGTAGTACTTCCTGTAGCAGTTACATCACTGCTTCTTCCTCCTGCTTATTGTGAGGAACCAGTGTGATCTCTCAGACCTCCTCTGCTGACTCCTACATCATGCAGCTCACCTCAAAGACAAAGGGCAAActtataagaagaaaaaaaaagtatagttATATGGTACACTGTGCTGAGTTTAGAAAGAACGCTGGTGATGTGCAGAAAACAATGCCAACATTTCTGAGCACGCTGTTCTGTTTCCAAGttctgataTGTGTGACAATGAAGAGCAAGGCTGAAAGTGTTTTTACTGGAACAGAAGGAGGCAGTGTGGATATCTCCTGTAAATACGCTGATGGATATCAGTATACACCCATGTACTTCTGTCGTGATCCATGCACTTCTTCTACTCATGTCTTAATTCGATCTGAGAAGGCTGATATGGTCGACTCTAAGGGAAGATACACTGCACTAAACACTGTCTCTAAACGTAGCTTTTCTGTCACCATCAGACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACGAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCTGTTCCTACTGTGTCCACTCATGCTCCAGTCTCAAGAGTGAATCAAAGCCCTGAGGCTACAGAACAACCCGATGCCTCCACAATGATAACAGCTACTGCAGTTCCTACTGAGTCAACTCGTGATCCAGTGTCGAGGCAGAATCAAAGCTCTCACAGTGATACCAAGTACTGCATGTAGGACCTAAATGCCTATTTGCTACACTCCAACTAGTAAACTCCTCATTATGTTTCTGTTAACCTATTAGCAACATCAGTAAAATAATTATTGGATTAATAATTAGATGCAAATTCAATCCTTGTATGGAACATTTAGATCCTTTTCTTGGAAAATTAGGGAGTACACAATAATTTCTTATAAAACGTGCAACATAGATATTTCTTTCATAATACTACTTCATATGAAAAGCCATCATCCAAAAGTCAGACTAAACATTCTTTAGCCCCacatgtttttcctttaatgataGCTCTGTTCTGTTTCTTATTTTCCAATATTGTCTAATCACTTGcatttaaatgatatatttaattGCCTGCTTATGATCAAAGAGGATTCTTGaataagtaaattattaaaaatgaaaatggattaCTCTGTTGATCTTACCTGAAAacctgtgttcatttactgCCAACTGCTTCTAAGGGTTCCGAAATTGTGAGTAAATATTTCTGGATTGGATCTAAGAAAGTGATTGAACTGTGAGAAGCT
>XM_034306493.1
aaagtttggtgtacctaattttaaaaactgaagtTCATCTCCAAGTTTAATGAATGTTAACGCCTAGATTTCACAGATGGCAGCACATTCCTTTACTATCAAAGATAGAGAATGTTACTTTTTGTAAGCAAGCTAAAAagacaccatttttttttcaacctcaGTATAATCtttgttatataatttaaaCACCAAATGCtatttgtattattacatttattttcatggaaGAAACAACTTATAGACTGATTCCATTTAATCACaccatatttaaaagaaaacttgaATCAATATATTTCAAAGACACTTGCCCCAACAGCaaagaataaaatgtgttcAGTCAGAGCTGTGATGTATCGCCTGTTCCTGTAGTACTTCCTGTAGCAGTTACATCACTGCTTCTTCCTCCTGCTTATTGTGAGGAACCAGTGTGATCTCTCAGACCTCCTCTGCTGACTCCTACATCATGCAGCTCACCTCAAAGACAAAGGGCAAActtataagaagaaaaaaaaagtatagttATATGGTACACTGTGCTGAGTTTAGAAAGAACGCTGGTGATGTGCAGAAAACAATGCCAACATTTCTGAGCACGCTGTTCTGTTTCCAAGttctgataTGTGTGACAATGAAGAGCAAGGCTGAAAGTGTTTTTACTGGAACAGAAGGAGGCAGTGTGGATATCTCCTGTAAATACGCTGATGGATATCAGTATACACCCATGTACTTCTGTCGTGATCCATGCACTTCTTCTACTCATGTCTTAATTCGATCTGAGAAGGCTGATATGGTCGACTCTAAGGGAAGATACACTGCACTAAACACTGTCTCTAAACGTAGCTTTTCTGTCACCATCAGACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACGAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGTCTCAAGAGTGAATCAAAGCCCTGAGGCTACAGAACAACCCGATGCCTCCACAATGATAACAGCTACTGCAGTTCCTACTGAGTCAACTCGTGATCCAGTGTCGAGGCAGAATCAAAGCTCTCACAGTGATACCAAGTACTGCATGTAGGACCTAAATGCCTATTTGCTACACTCCAACTAGTAAACTCCTCATTATGTTTCTGTTAACCTATTAGCAACATCAGTAAAATAATTATTGGATTAATAATTAGATGCAAATTCAATCCTTGTATGGAACATTTAGATCCTTTTCTTGGAAAATTAGGGAGTACACAATAATTTCTTATAAAACGTGCAACATAGATATTTCTTTCATAATACTACTTCATATGAAAAGCCATCATCCAAAAGTCAGACTAAACATTCTTTAGCCCCacatgtttttcctttaatgataGCTCTGTTCTGTTTCTTATTTTCCAATATTGTCTAATCACTTGcatttaaatgatatatttaattGCCTGCTTATGATCAAAGAGGATTCTTGaataagtaaattattaaaaatgaaaatggattaCTCTGTTGATCTTACCTGAAAacctgtgttcatttactgCCAACTGCTTCTAAGGGTTCCGAAATTGTGAGTAAATATTTCTGGATTGGATCTAAGAAAGTGATTGAACTGTGAGAAGCT

Function

GO: NA

KEGG:

id description
ko04060 Cytokine-cytokine receptor interaction
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306492.1 True 1669 mRNA 0.37 4 9599821 9602488
XM_034306493.1 False 1639 mRNA 0.36 4 9599821 9602488

Neighbor

gene id symbol gene type direction distance location
LOC113536035 LOC108265641 coding upstream 17081 9574382 ~ 9582740 (+)
kdm5bb LOC108265643,LOC108425081 coding upstream 26783 9547306 ~ 9573038 (+)
tuba5 tuba8l,LOC108425079,LOC108265838,LOC107711852,LOC107679810,LOC107594520,LOC103031418 coding upstream 56542 9538833 ~ 9543279 (+)
LOC113534601 klhl12 coding upstream 62711 9521454 ~ 9537110 (+)
adipor1b adipor1,adipor1b,LOC108425077,LOC107679819,LOC107594512,LOC107711855 coding upstream 80563 9510939 ~ 9519258 (+)
LOC117597803 LOC108265688,LOC108265689 coding downstream 8305 9610793 ~ 9614695 (+)
LOC117597805 LOC108265689 coding downstream 13116 9615604 ~ 9620956 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding downstream 21812 9624300 ~ 9637023 (+)
ddx20 ddx20,LOC107556298 coding downstream 49383 9651871 ~ 9658559 (+)
cttnbp2nlb cttnbp2nl coding downstream 331804 9934292 ~ 9965096 (+)
G129849 NA non-coding upstream 104091 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 145412 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 261871 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 287370 9309503 ~ 9312451 (+)
G129707 NA non-coding upstream 464886 9119938 ~ 9134935 (+)
G129996 kcnd3 non-coding downstream 69579 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 113168 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 430862 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 483073 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 916952 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 128542 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1287165 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1628072 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1738251 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2168824 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 58327 9660815 ~ 9665693 (+)
G130390 NA other downstream 755458 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 941431 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1080590 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1104231 10706719 ~ 10741425 (+)

Expression


Co-expression Network