LOC117597805 (LOC108265689)


Basic Information

Item Value
gene id LOC117597805
gene name LOC108265689
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 9615604 ~ 9620956 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306494.1
aagaaactgttgcagagACTGATGGTGGTGACACGGATGCTCCTGTaacttctgccagatggcaggcgGTTTCAGTGGATATCTCCTGTAAATACGCTGATGGATATCAGTATACACCCATGTACTTCTGTCGTGATCCATGCACTTCTTCTACTCATGTCTTAATTCGATCTGAGAAGGCTGATATGGTCGTCTCTAAGGGAAGATACACTGCACTAAACACTGTCTCTGCACGTCGCTTCTCTGTCACCATCAGACACCTTACATTAAAGGACTCTGGAGTTTATTACTGTGGAGTGGACAAATGGGGCTCTGACAAGTTGACTAAAGTAAAGCTTACTGTCAGTAAAGCTCTTGTGATTGTCTACAGGAaaacctccaacacacacaccatttGTTGTTGTTTACTGCCTGCTCCTGAAAACCAAATTCCACATTCACCACCTTATCAGGAGGACATTCGCCATGTGTATGATGAGATGCTGGCTGTGTAAAGTTTAGCTGGTCCAGCTATAGGAGATGATTCTTCAGCCACGTACAGCACCATTCAGCTCCCCGCTCCAGTAGATAATGATTGCAGTCCATACTCTCTTGTAGCTCCTCACTAAAAACAGTTACAGCACCCTATATATGTGAGGTGTATCATACACAAAGGTAAAAACCATTCTGTGCATTTCAAGAAAATAAGGACTCTTGGGGACACAAGTTTTCTTTTTAGCTGATTACTATCTTATTTACACTTCTATATTCCTCACATATTTAAACAACTAACAAGACTTGACCTGACTTATTGTTCATTACAAGCATGTTAAAGATAAACCTGAACTTTCTAAAACATCCTGTGGCAAACTGACACTTGGGCATCTGCTCAGTACTTCTGGTGTGACTGTGAAGCTTATTTTATCATGCTGACTTGCAGCTCTTATGCAAACATGAGCATTTCATACATATGCAAATTGAATGCACACTAAGCTAAACCAAGAGCCTTACTGAAAATAGTGTTCACTACACGCTACACTTTACACAGGTGTCTAATACATAAAAGGCTGGGAACGATCTCAGTATATTATTCTCTGTGTCTGATGTGGGTTTAACAAAAAGTTATTAATAGTTCAATAGATGAATAGAAAGTGGCATAAAACAGACCTTTATATGTAGCCACTGGAGgtgttattattaaaatgtttcctTATCAACTGTTGCTACTTGCTTGCATTCA

Function

NR:

description
PREDICTED: CMRF35-like molecule 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306494.1 True 1219 mRNA 0.40 5 9615604 9620956

Neighbor

gene id symbol gene type direction distance location
LOC117597803 LOC108265688,LOC108265689 coding upstream 909 9610793 ~ 9614695 (+)
LOC117597804 NA coding upstream 13116 9599821 ~ 9602488 (+)
LOC113526970 NA coding upstream 14520 9594790 ~ 9601084 (+)
LOC113536035 LOC108265641 coding upstream 32864 9574382 ~ 9582740 (+)
kdm5bb LOC108265643,LOC108425081 coding upstream 42566 9547306 ~ 9573038 (+)
rap1aa rap1a,LOC106572472,LOC107594522,LOC106952760,LOC107090729,LOC107389464,LOC106567206 coding downstream 3344 9624300 ~ 9637023 (+)
ddx20 ddx20,LOC107556298 coding downstream 30915 9651871 ~ 9658559 (+)
cttnbp2nlb cttnbp2nl coding downstream 313336 9934292 ~ 9965096 (+)
wnt2bb wnt2b,LOC108425044,LOC107562779,LOC107669677 coding downstream 392384 10013340 ~ 10031188 (+)
mov10b.2 LOC108265909 coding downstream 435273 10056229 ~ 10077521 (+)
G129971 NA non-coding upstream 13072 9600195 ~ 9602532 (+)
G129849 NA non-coding upstream 119874 9450562 ~ 9495730 (+)
G129850 tmem189,LOC107556313,LOC107751443,LOC107669672,LOC108425075,LOC107711858 non-coding upstream 161195 9453034 ~ 9454409 (+)
G129831 NA non-coding upstream 277654 9324708 ~ 9337950 (+)
G129805 LOC108265845 non-coding upstream 303153 9309503 ~ 9312451 (+)
G129996 kcnd3 non-coding downstream 51111 9672067 ~ 9672335 (+)
G130021 NA non-coding downstream 94700 9715656 ~ 9715868 (+)
G130231 NA non-coding downstream 412394 10033350 ~ 10033565 (+)
G130285 NA non-coding downstream 464605 10085561 ~ 10147134 (+)
G130415 NA non-coding downstream 898484 10519440 ~ 10524699 (+)
cebpb LOC108265421 other upstream 144325 9462088 ~ 9471279 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 1302948 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 1643855 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 1754034 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 2184607 7424001 ~ 7430997 (+)
LOC113532719 LOC108265185 other downstream 39859 9660815 ~ 9665693 (+)
G130390 NA other downstream 736990 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 922963 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1062122 10683078 ~ 10696831 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other downstream 1085763 10706719 ~ 10741425 (+)

Expression


Co-expression Network