polr3d (polr3d)


Basic Information

Item Value
gene id polr3d
gene name polr3d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 27926636 ~ 27933229 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306513.1
GCAAAACCCCGCCCATTAATCGGTGGCTACAAATTTCATCAGGGAGTGCAGATtgtaaaaactgtatttttaataagagaCAGTTTGTCTTGGATGTGTTTGAAGACGTTTGGTTTCAGTCAGCAGGAGAAGAAAGCGgAGTGAGGATGGCGACCCCAGGCTCCGGTGACTCCTCTTCAAACCCGAGGCCCGTGGCTGGGGGTCGGGGCTCGATGCTGAACCTCCGGGCGCCGGGGCGCCTGCCCACCATGCGCTCCAGAGACCTGACGCTGGGAGGCGTGAAGAAAAAAACCTTCACACCCAACATCATCGGCCGAAAGAGTAAAGAAGAACTGAAAGTCAACGAGGGAccgaggagagagaggaaggatgCGGATCGCGGGCGACAGCGAGATGGGCGGGGCAGGGGGCGTGGCCGACCAGAGGTCATCCAATCCCACTCCATCTTTGAGCAGGGACCTGCAGAGATGATGGCCAAGAGGAGAGGTGTGTATGAGGACACGCGGGACACGCCCAACAGCGCCCCCTGTCCCATCATCAACAttaagaaagagaagagagagacagaagaggagACCAAAGAGATCCTGCGCAAGCTGGAAAGAGacaatTTTGTGGACGACCCGCAGCTGAGGAACGAAGCGCGCTGCTGTCCCGTGCAGCTTCCTCTGGCCGTGTCCGGCTGGGTGTTTAAAGAAGAGTTCGAGGAAGACGCTGAGAACGGAGGAGTCAAAGTGGAGAAGTGTGCAGAGGATGAAAAGATGAACACAGAGTGCTCAGACACTGCTgttacagtCAAACAGGAGCCTCCTGACATCCCTGTGATGAAGAAGGCGGAGCCCACGTTTAAGCCGCCGCCCCTCCCTGAACCAGACTTGCTGCCTGACCTGCTGCAGGCGTGGAGTCGCTGCAAAGAGGAGGAGCTTCTGTTCATGCAGCTCCCTGATTCGCTGCCGGGACAACCGCCGACCAGCGACGCCCGACCCACTAAAACCACCGTGCAGTCCGAGGACGGACAGAACATGCTGCAGAAGGCTGAAGGGCAGcaggagGAGGAGCCTGAGGAGGAGAACAGTTGTCATctgaaggagctgcaggaggGTTTGGTGGGCCGATTGTTGGTGAGGAAGTCGGGACGAGTGCAGCTCGTGTTGGGGAACATCACACTGGATGTGGCTCTGGGGACGTCCTGCTCCTTCCTCCAggagttaGTGTCAGTGAGCACAGAGGGCAGGAGAGGAGACATGACTGTACTCGGCCACGTTAAACACAAACTCGTCTGTTCGCCTGACTTCGAGGCTCTCCTTCAGAACAGAGCTTGAATGTGTGttgtacagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaaggtgtgTATCTGCATCAGCTTGTCTCCTCCAGTTTACAAACCTGTACCTTTAATGGCTTGGAGATGCAGCTCTGTTAGGTTTTtgagacatactgtataatctatatatactgtatatataaaattatttaaattgaaaatatgGTTCTGCAATGtgattaaagggg
>XM_034306514.1
GCAAAACCCCGCCCATTAATCGGTGGCTACAAATTTCATCAGGGAGTGCAGATtgtaaaaactgtatttttaataagagaCAGTTTGTCTTGGATGTGTTTGAAGACGTTTGGTTTCAGTCAGCAGGAGAAGAAAGCGgAGTGAGGATGGCGACCCCAGGCTCCGGTGACTCCTCTTCAAACCCGAGGCCCGTGGCTGGGGGTCGGGGCTCGATGCTGAACCTCCGGGCGCCGGGGCGCCTGCCCACCATGCGCTCCAGAGACCTGACGCTGGGAGGCGTGAAGAAAAAAACCTTCACACCCAACATCATCGGCCGAAAGAGTAAAGAAGAACTGAAAGTCAACGAGGGAccgaggagagagaggaaggatgCGGATCGCGGGCGACAGCGAGATGGGCGGGGCAGGGGGCGTGGCCGACCAGAGGTCATCCAATCCCACTCCATCTTTGAGCAGGGACCTGCAGAGATGATGGCCAAGAGGAGAGGTGTGTATGAGGACACGCGGGACACGCCCAACAGCGCCCCCTGTCCCATCATCAACAttaagaaagagaagagagagacagaagaggagACCAAAGAGATCCTGCGCAAGCTGGAAAGAGacaatTTTGTGGACGACCCGCAGCTGAGGAACGAAGCGCGCTGCTGTCCCGTGCAGCTTCCTCTGGCCGTGTCCGGCTGGGTGTTTAAAGAAGAGTTCGAGGAAGACGCTGAGAACGGAGGAGTCAAAGTGGAGAAGTGTGCAGAGGATGAAAAGATGAACACAGAGTGCTCAGACACTGCTgttacagtCAAACAGGAGCCTCCTGACATCCCTGTGATGAAGAAGGCGGAGCCCACGTTTAAGCCGCCGCCCCTCCCTGAACCAGACTTGCTGCCTGACCTGCTGCAGGCGTGGAGTCGCTGCAAAGAGGAGGAGCTTCTGTTCATGCAGCTCCCTGATTCGCTGCCGGGACAACCGCCGACCAGCGACGCCCGACCCACTAAAACCACCGTGCAGTCCGAGGACGGACAGAACATGCTGCAGAAGGCTGAAGGGCAGcaggagGAGGAGCCTGAGGAGGAGAACAGTTGTCATctgaaggagctgcaggaggGTTTGGTGGGCCGATTGTTGGTGAGGAAGTCGGGACGAGTGCAGCTCGTGTTGGGGAACATCACACTGGATGTGGCTCTGGGGACGTCCTGCTCCTTCCTCCAggagttaGTGTCAGTGAGCACAGAGGGCAGGAGAGGAGACATGACTGTACTCGGCCACGTTAAACACAAACTCGTCTGTTCGCCTGACTTCGAGGCTCTCCTTCAGAACAGAGCTTGAATGTGTGttgtacagctgtgtgtgtgtgtgtgtgtgtgtgagagagagaaaggtgtgTATCTGCATCAGCTTGTCTCCTCCAGTTTACAAACCTGTACCTTTAATGGCTTGGAGATGCAGCTCTGTTAGGTTTTtgagacatactgtataatctatatatactgtatatataaaattatttaaattgaaaatatgGTTCTGCAATGtgattaaagggg
>XM_034306515.1
GCAAAACCCCGCCCATTAATCGGTGGCTACAAATTTCATCAGGGAGTGCAGATtgtaaaaactgtatttttaataagagaCAGTTTGTCTTGGATGTGTTTGAAGACGTTTGGTTTCAGTCAGCAGGAGAAGAAAGCGgAGTGAGGATGGCGACCCCAGGCTCCGGTGACTCCTCTTCAAACCCGAGGCCCGTGGCTGGGGGTCGGGGCTCGATGCTGAACCTCCGGGCGCCGGGGCGCCTGCCCACCATGCGCTCCAGAGACCTGACGCTGGGAGGCGTGAAGAAAAAAACCTTCACACCCAACATCATCGGCCGAAAGAGTAAAGAAGAACTGAAAGTCAACGAGGGAccgaggagagagaggaaggatgCGGATCGCGGGCGACAGCGAGATGGGCGGGGCAGGGGGCGTGGCCGACCAGAGGTCATCCAATCCCACTCCATCTTTGAGCAGGGACCTGCAGAGATGATGGCCAAGAGGAGAGGTGTGTATGAGGACACGCGGGACACGCCCAACAGCGCCCCCTGTCCCATCATCAACAttaagaaagagaagagagagacagaagaggagACCAAAGAGATCCTGCGCAAGCTGGAAAGAGacaatTTTGTGGACGACCCGCAGCTGAGGAACGAAGCGCGCTGCTGTCCCGTGCAGCTTCCTCTGGCCGTGTCCGGCTGGGTGTTTAAAGAAGAGTTCGAGGAAGACGCTGAGAACGGAGGAGTCAAAGTGGAGAAGTGTGCAGAGGATGAAAAGATGAACACAGAGTGCTCAGACACTGCTgttacagtCAAACAGGAGCCTCCTGACATCCCTGTGATGAAGAAGGCGGAGCCCACGTTTAAGCCGCCGCCCCTCCCTGAACCAGACTTGCTGCCTGACCTGCTGCAGGCGTGGAGTCGCTGCAAAGAGGAGGAGCTTCTGTTCATGCAGCTCCCTGATTCGCTGCCGGGACAACCGCCGACCAGCGACGCCCGACCCACTAAAACCACCGTGCAGTCCGAGGACGGACAGAACATGCTGCAGAAGGCTGAAGGGCAGgagGAGGAGCCTGAGGAGGAGAACAGTTGTCATctgaaggagctgcaggaggGTTTGGTGGGCCGATTGTTGGTGAGGAAGTCGGGACGAGTGCAGCTCGTGTTGGGGAACATCACACTGGATGTGGCTCTGGGGACGTCCTGCTCCTTCCTCCAggagttaGTGTCAGTGAGCACAGAGGGCAGGAGAGGAGACATGACTGTACTCGGCCACGTTAAACACAAACTCGTCTGTTCGCCTGACTTCGAGGCTCTCCTTCAGAACAGAGCTTGAATGTGTGttgtacagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagaaaggtgtgTATCTGCATCAGCTTGTCTCCTCCAGTTTACAAACCTGTACCTTTAATGGCTTGGAGATGCAGCTCTGTTAGGTTTTtgagacatactgtataatctatatatactgtatatataaaattatttaaattgaaaatatgGTTCTGCAATGtgattaaagggg

Function

symbol description
polr3d Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Orthologous to human POLR3D (RNA polymerase III subunit D).

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K03026 RPC4, POLR3D; DNA-directed RNA polymerase III subunit RPC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306513.1 True 1570 mRNA 0.54 9 27926636 27933229
XM_034306514.1 False 1540 mRNA 0.54 10 27926636 27933229
XM_034306515.1 False 1567 mRNA 0.54 9 27926636 27933229

Neighbor

gene id symbol gene type direction distance location
gins4 gins4,LOC107678389,LOC107747805,LOC107698091 coding upstream 22004 27898573 ~ 27904632 (+)
arid5a LOC108265471 coding upstream 29378 27876195 ~ 27897258 (+)
ube2d4 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding upstream 95258 27822537 ~ 27831378 (+)
fkbp15b LOC108265163 coding upstream 227768 27678915 ~ 27698868 (+)
tubb2b tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 325180 27598414 ~ 27601456 (+)
olfml2a olfml2a,olm2a coding downstream 21053 27954282 ~ 27983083 (+)
LOC117597849 NA coding downstream 71854 28005083 ~ 28015288 (+)
si:ch211-158d24.2 LOC108265298 coding downstream 120959 28054188 ~ 28090793 (+)
LOC113546156 NA coding downstream 169960 28103189 ~ 28110098 (+)
si:dkeyp-14d3.1 tmem132c coding downstream 263627 28196856 ~ 28413159 (+)
G140237 NA non-coding upstream 75304 27774737 ~ 27851332 (+)
G140236 NA non-coding upstream 152992 27772444 ~ 27773644 (+)
G140170 NA non-coding upstream 315301 27610947 ~ 27611335 (+)
LOC113546137 NA non-coding upstream 316076 27603917 ~ 27610560 (+)
G139807 NA non-coding upstream 357551 27560390 ~ 27569085 (+)
G140307 NA non-coding downstream 191377 28124606 ~ 28124811 (+)
G140311 NA non-coding downstream 203382 28136611 ~ 28136832 (+)
G140318 NA non-coding downstream 222479 28155708 ~ 28155911 (+)
G140328 NA non-coding downstream 238359 28171588 ~ 28171793 (+)
G140574 slc15a4,LOC107564463,LOC107712031,LOC107576090 non-coding downstream 485891 28419120 ~ 28434435 (+)
dbnlb dbnl other upstream 66934 27838245 ~ 27859702 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other upstream 436175 27405450 ~ 27490461 (+)
G139781 NA other upstream 497159 27428727 ~ 27429477 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other upstream 631299 27267175 ~ 27295337 (+)
fam160b2 LOC108265858 other upstream 664895 27183021 ~ 27261741 (+)
arpc5la arpc5la,LOC108265305,LOC108411248,LOC107571143,LOC107753090,LOC107550963,LOC107676626 other downstream 85955 28019184 ~ 28027450 (+)
slc7a4 slc7a4 other downstream 815605 28748834 ~ 28803174 (+)
LOC117597881 LOC108265326 other downstream 1392705 29325934 ~ 29351762 (+)
LOC113546008 LOC108264940,LOC108412050 other downstream 1926959 29860188 ~ 29876280 (+)
LOC113546064 hps4 other downstream 1970284 29903513 ~ 29929070 (+)

Expression


Co-expression Network