fgd (fgd3)


Basic Information

Item Value
gene id fgd
gene name fgd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 21623985 ~ 21672425 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306537.1
cagattattggagaggagagcagagcagaggagaggagTGGGAGGGATAcagtgagagaagagaaagaaacagcagTCCCTCTACAGGAAACCGGACAGAGCCTGGGGAAGGAGTGAATGGATCGATGCtcatgtaaaagaaaagaaaaagaggcttGACTCTGGAAATAGATTTAGtgttccagttttttttttctccaccacaacagactgagtgtgtgtagcaAATGGAGAAAGTCAACAGGAAAGTTTGACGTTCATTCAACTGAAACAGAGTGGAAAGAAGTGTGAAACATACTGCTTCATGATGGAGGAGAGTTTACTCGGGAAGATGCAGGGAATCCCAGCAGCCGACCTCTCATCCTCACTCTTACAGTATTCCTGTGGATCATTGGATTTGGTGTTGAAAAAGAAAACCTCTCCTCTTCCCAGATCATGTCACAACCACGTTGTTGGGAAGCCCTGCCACGATCCCTCAGCTGCACAGAGAAAGCCAACATCACTGAGACCTCAAGtGCCCCCTAAGCCCACTAAGCTGCTTGCTTTGCGGCAGGACAAGCGACCACAGCAAATCCCTCCAGCGCCTTGTCGCCCTCTCCCAATCCCTCCACCCAAACCCAAACCGCTCCCATCCAAGCAGCAGAAACATCCTGCCAAGAGTGTGTGTCTCCTCATTGAGAAGTTTGAAAACTCCAGGGCCCCAATTCTGGGAGTCCAACCCAAAAGTGCCCTCCCGCTGCACCTGAGGATGGAGACTCCAGTGCCTGAAATCACAGAACAGCCTCAGTTTAATGAGTCAGAGGTCAATGACTCTGGGAACACATTCTCAGTGGATGAAATTGCACTTAAAAGGGATATGGACTTTCCTACTTTAGAATTTTTAAGAATAGACTGTGCCAATGACGCAGGCAGTCAAGACAAACTTGACCAGGAGTGCCACAGTGGGGATCTGGACATTAACCACAGTGATTCCGACGATAACCACAGCAATGCAGAGCATACAGTTAAAGACCTAGATCATAACAATATTGACACAGGACATGATGTTGGAAGTTTAATAGGCGGACCATGTGCAGGACAGGTTAACAGTGTGACAGAAGCAAATGGAAAGATACCAAATCGTGACAGCGGAATAGACAGCCCGTCCTGCGGAGCCGAGGGAGAGGCATTTCCAAATGAGGTCCCCATtgaagaggaagaaaggaatGACAGCATAGCCACAGAAACTGAGAGTGTATCTTGTGTCACCACTAGCAATAAGCGGGACTCAACACAGGATGAAGATAGCGACTTGGATGAAGGGAGCAGCGAAGAACCAGAGAGCGTAGAAGTCAAAgGTTTGCAGTCTGAGTCTCAGAAGCTGTTCAATATCGCACAAGAACTCCTCCATACAGAGGAAGCTTATGTCAAGAGACTCAACCTGCTAGATAAGGTGTTCTGTACTAAGTTGACAGACGCAGGGATTCCTGTAGATGTGATTAACGGGATCTTCTCAAACATCTCCTCAATCTACTGCTTCCACCATCAGTTCCTGCTGCCAGAGCTACAGACACGAATTACTCAAGAGTGGAACACAAATCCACGTATAGGTGATATCCTGCAGAAGTTAGCTCCGTTTATGAAGATGTATGGGGAATATGTCAAAAACTTTGACCCCGCAATGGACTTGGTCAACACATGGACCCAGAGATCAACCCAATTCAAAAGCGTGGTTCAAAATATCCAGAAGCAGGATGTATGTGGTAACTTGACATTGCAGCATCACATGTTGGAGCCGGTGCAACGTATTCCTCGTTATGAGCTCCTCCTCAAAGACTACCTGAAGAAATTGCCCAGTGATGCACCAGATAGGAAAGATGCAGAGAAGGCTCTGGATTTGATCTCCACAGCAGCTAACCATTCTAATGCTGCTATTAAAAAGATGGAGAAGATGAATAAGCTGCTGGAGGTGTATGAACGATTGGGTGGGGAGGACGACATCGTTAATCCAGCTAATGAACTTATTAAAGAGGGTCATATAAAGAAGATGTCTGCTAAAAATGGCACAGCCCAAGACAGATACCTCTACCTGTTCAATAACAGGTTGCTGTATTGTGTGCCTAAGTTGCGACTGATGGGACAGAAGTTTAGCGTCAGAGAGAGAATTGACATAGCAGGCATGGAGGTTCAGGAGAATGTAAAGCAGAACCTGGCTCACGCTTTTGCCATCATCGGCAAGCAGCGGTCTCTTGAACTGCAGGCcagAaatgctgaagaaaagcaggaaTGGATCCAGGTAATCTTGGCCACAATAGATaagcaaaaacagaaaagtgagACATTTAATAAAGCCTTCATTAGCTCCTTGTCCCGTGatgatgaacacacacctgactCACCGAGTTCATGGACTAATACGTCTGTAGATTCAGATGGAGGTGTGAATGAAAGGAGGAGTTCAAAGAAacgagagaaggagaaggagacatgTAAGGGGTGCAACGAAACTTTTCACTTCACCAAACGCAAGCACCACTGCAAGAACTGTGGCGCGGCTGTCTGTGGTAAATGCTCAAAGGTGTCAGAGACCAAGAACATCCGCCTGTGTAAGCAGTGTTTCGAGCTCCTGCAAGGGCCTGATGGGACGCCAGGGGGCAATGTtgagcagaagaaaaaaacaatggtaGAGAAGCAGCTCTCCTTGACAGGTGATAGTTGTGTACTATGCAGTCAGCTCCTGGTTCAGGAGAAAGGAAAGAACTGGACCAAGACCTGGGTGGCCATAACAAAAGCAGAACCACTAATGCTTTACCTACAGACTGGCAACCAgGATGTGCGTGGAGCCCGGATGATCTCTCTACCTGGTTATGATGTCAGCACAGTGTTAACACCTTCGGAGAAGTCAGAAGGAAAACATGTGTTCAGGCTCAGCcactcccagcatgcactgctcTTCAGTGCCTCGGATGCAGAATTAATGGACAAGTGGGTGGAGTGTCTGTCCCATGCTGCAAAAGGGGTGGCTTTAGAGACGTCGCTAAGCGTGACAGAGCACCGTAAGAGCCAGTGAGAACAAGGCATTGAAGCAACAGAACTTTGTCTTATAGAACTTGTTACTTGAATTCACATTATaatcagcactttttttttttttttttttttttttttagtttttagttccTCTTCACTTCTTAGTTGCTCCTTTCACAAAAGCACAGGAAGCATTTGTACACATACATGCACTGTTCCAACTCCTCTGCCACTGTTGTGATGGTGTGTGGCTGGTTCCTAAATgcactgtttcctttttttcaagATTCCTTTTGTATTATAATAGATAAGGTTGTtgtggatttttattaaatattataagatgaatgttttatgattttgttGCAGGTTCatgtaaattgttattactTGTTTAGCATTAACTCACATACACTTTTGCTGAAGTACTGCCTCAGACACCGTTTTCTTCACTGTGTATTAGTTTTCTTTTCGTCTTTGTCTGCACACGATATTCTGCTCCTGAACGACATTGTGGCTTTGTAGCCTCTTTTGAGGTTCAGGCTTATGAAAGAGGAACCTCCATTTTAAGTAAAACGAAAAAAGGTGGCGGGCCACTGAATTATTCTGCTGTAATATCGTCTCATTAGTAGTTTCTTTTCTCAACACACTCATTTCCCAGCTCACTCATTTCCTTTGTGTGCCGTTGTTATTCTACATGGCCCTTTTAAATAATCTAACATACTTTCCCCATTTCAGTACATCTGCTGTATTTGTACTGTCCTGGAAGTACTGTAAGACTTAGCTACCACCCACAAATGAAACAAAGGACTCTTGTGAGTGTCTGAAGATGGCTAACAAACATGCTTGTAGTATCCCATATTTATAATTTGTGCTTTTAAAAACCCTGCAAGCATTTCTGCCTCCTGAACATGGATTTTAACCTACAGAACCGGGATAATTGTGATCATTTTTAAACCGTAAGTGTTCACAAATGGAATTGTGTCTACCATATcatcagaataaaataatatccgGGTT

Function

symbol description
fgd3 Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Predicted to be involved in several processes, including filopodium assembly; regulation of GTPase activity; and regulation of cell shape. Predicted to be located in Golgi apparatus; lamellipodium; and ruffle. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 3-like isoform X1

GO: NA

KEGG:

id description
K05722 FGD3; FYVE, RhoGEF and PH domain containing 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306537.1 True 4029 mRNA 0.44 19 21623985 21672425

Neighbor

gene id symbol gene type direction distance location
LOC113533260 LOC108265644,LOC108442352,LOC103023429,LOC107594970 coding upstream 7902 21567910 ~ 21616083 (+)
mib2 mib2 coding upstream 61415 21489384 ~ 21562570 (+)
ubiad1 ubiad1,LOC107718257,LOC107572294 coding upstream 139028 21481381 ~ 21484957 (+)
cdk11b LOC107575169,LOC107718258,LOC108265382 coding upstream 167262 21438250 ~ 21456723 (+)
LOC113533389 slc35e2b,s35e2,LOC108265386 coding upstream 188032 21416892 ~ 21435953 (+)
LOC113533228 NA coding downstream 2311 21674736 ~ 21687440 (+)
trnaa-ugc_2 NA coding downstream 15699 21688124 ~ 21688195 (+)
trnaa-ugc_3 NA coding downstream 16095 21688520 ~ 21688591 (+)
trnat-cgu_3 NA coding downstream 17242 21689667 ~ 21689738 (+)
trnaa-ugc_4 NA coding downstream 17600 21690025 ~ 21690096 (+)
G136433 NA non-coding upstream 262105 21360839 ~ 21361880 (+)
G136429 NA non-coding upstream 276824 21346845 ~ 21347161 (+)
G136056 NA non-coding upstream 658517 20947304 ~ 20965468 (+)
G136057 NA non-coding upstream 684915 20937123 ~ 20939070 (+)
G135643 LOC107737118 non-coding upstream 1609215 20014522 ~ 20014770 (+)
G136466 NA non-coding downstream 2433 21674858 ~ 21693702 (+)
G136532 NA non-coding downstream 152564 21824989 ~ 21825322 (+)
G136544 NA non-coding downstream 167207 21839632 ~ 21839852 (+)
G137017 NA non-coding downstream 476198 22148623 ~ 22149777 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 632304 22304729 ~ 22307615 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 876129 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1181794 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 1438367 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 1721618 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 2121342 19487487 ~ 19502643 (+)
LOC113533123 LOC108265628 other downstream 108798 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 153257 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 420170 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 835201 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 922109 22594534 ~ 22636989 (+)

Expression


Co-expression Network