fhad1 (LOC108266054)


Basic Information

Item Value
gene id fhad1
gene name LOC108266054
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11858468 ~ 11861880 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306543.1
GGCTCGTGACTTCACTCCGCTTCCCTGAGGTTTTAGACTGTAGAGATATGTAAACTATGTTACTTTTCATCGAGGGATTTTCAGCATTTCATTCAGGTGAATGACGAAAGGGGAGAAATAGTAAATGCGAGTAAATTCATTATGCGTGTAAATCAAGAGGAACTATATTCATCCAAGTATATAAACCCATCAGTGCTGCAGTTTACGTGTGTGTTCTCTGGTTATTCTGAAGAATTCTTTTGAGCAGAATAAAATGAAGGGTTATCTTAAAACCTTAAGCTGGATATTTAAACTCCAACCCAAGAGCACTACAGTGGGAAAACACAGGGATTCAGATCTCTGCCTCCAGAATGGTGGTGTGGATGAGCACCATGCTACTATTGAATGGAATGAGATGGAGCACTGCTATGTTCTTAACGACCTGAACTCTGCCCATGGCACTTATGTCAATGACTGTCGCATACACAACGCAGCAGTGCGTCTTACACCAGGGGACGAGATTCACTTTGGTTACGGAGGCTCAGCCTACAAGCTCTTAGTGGATCCTGCAGACCCACTCCCTGTTCTGCCTATCCAGTCTGCCACTTCTCCAGCTGGAGTAAGGAGTCGTGCACTGTCTTCTTCTGTtactcctcatcctcctcgCAGGCCTCGACCTGCAAGTGCAGGAGCTAAACGCAGCAATTTGGGCACAAATATTCCAGAGTACAGTGGCTTCTCTCGTAGACCAGGAAGCTGGGCCAGCAGCATAGGAAGAGGACTCATTTTTAGAAATACAAGCATATCCCAGAGCTGTCAAAGCATGCAGGACTTATAACAGGACAAGGAGGAAAGCTGGGCGAGGTGTAGGGAGGAACAGAGTGGTGTGCTAGCGTCTCATGGTGAAGCTGAAAGGAAGGAGTGTATGA

Function

NR:

description
PREDICTED: forkhead-associated domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306543.1 True 908 mRNA 0.46 5 11858468 11861880

Neighbor

gene id symbol gene type direction distance location
LOC113530463 LOC108266055 coding upstream 1215 11854167 ~ 11857253 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding upstream 8481 11841583 ~ 11849987 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding upstream 18584 11803048 ~ 11839884 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding upstream 67295 11766040 ~ 11791173 (+)
col2a1a col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244 coding upstream 94877 11738339 ~ 11763591 (+)
efhd2 efhd2,LOC107711975,LOC107591793 coding downstream 20366 11882246 ~ 11904257 (+)
taf10 taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678 coding downstream 44868 11906748 ~ 11910004 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding downstream 85571 11947451 ~ 11957403 (+)
tspy LOC108265788 coding downstream 134163 11996043 ~ 12000770 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding downstream 148193 12010073 ~ 12033492 (+)
G131061 NA non-coding upstream 140583 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 306437 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 499088 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 910122 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 941843 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 355124 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 364272 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 658014 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 828287 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 838832 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 144436 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 161677 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 224624 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 984342 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 1117043 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 117306 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 334713 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 737818 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1843286 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 2028524 13890404 ~ 13948808 (+)

Expression


Co-expression Network