ncor2 (ncor2,LOC107753125,LOC107684513,LOC106585520)


Basic Information

Item Value
gene id ncor2
gene name ncor2,LOC107753125,LOC107684513,LOC106585520
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 26889333 ~ 26989582 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306547.1
aaaagcagcagcaggagcagcagcagcagcaggaggagcagaTTTTTCGGACATTTTGTGGATTTCTGCTTGGAATTGTGAGCAAAAAGTGGACAATGTGGGATCATATCAAGTCTCTGAACACGCCTGTGTGGGGATGAGTGGAGGAAAGAGTGgataaaaggaggaaaagagagaagagaagcggagagaggagaaaggagGATATCACTtattcacccacacacacacacacacacacacacacactccgaggACCGGGTGTAGGGGGGGGCAAAACCGACCAGGACCCTTCTCTACATGTGGATTAATTtcaaatttttacaaaaaaaaaaaaaaaaacaaaacaaacaacataaataacaaacaagCCTACTGGatacacacacctacagtcACACACCTAATACACAAGGTTGTTGTTGACGGTCAGGACTCGATTCCGAAGAATGGTCAGCGTGCATAGAgcggccacgcccacttcctgtGCGTAGAGGAAGTCTCGTCATCAGCATGTCCTCTCACCCGCAGCCGGTGCCTCAGAGCCGGAGAGCTGTGGACGCCCGACACCTGCCGAGTTCAGCCAGCCTTCCTCTGCCCATAGCCCGCGCTCacacgGATGTTGGAATAGTGAACTACAATGCTCGGGACTTCGGTTCCCATCTCTCCCATGGAGCTCTCGCCCAGTCTCACCGCCGCAGACCGTCCCTGCTTTCGGAGTTTCAGCCCGGGAACGAGAGagGCACAGAGCCCCACGTCCGATACGAGCACATATATCTACCCGAAGCCAACAGCCAATCGGAGGTGGAGTATGGCGAGATAAAGCGGCCTCGCCTGGAGATCGGGGCGGAGCCTCTAATGCGTCATCCGCCTCAGCGCCCGCCTCTGCCTCTGACTGGAGCCGAGGATGTCGTGAAGGAGCGTGGCGGCAGCAGCTCGATGGGGAAGATCGAGCCCATCTCTCCGGTGAGTCCAGCGGTGATGGAGGCTGACCTGGAGCTGGTGCCTACGCGCTTTTCTAAAGAGGAGCTCATCCAGAACATGGACCGCGTGGACCGAGAGATCACCATGGTGGAACAGCAGATCTGCAAACTGAGGAAGAAACAGcaACAGCTGGAGGAAGAGGCGGCGAAGCCCCAAGAGCCAGAGCGCAATATTTCTCCTCCACCCAGCGAAGCCAAACACCGCAGCCTTGTACAGATCATCTACGATGAGAAccggAAAAAAGCAGAGGAGGCTCATCGTATCCTAGAGGGACTGGGACCCCGAGTGGAACTGCCACTGTATAACCAGCCGTCTGATACGAAGCAGTACCACGAGAACATTAAAATAAATCAGGTGATGAGGAAGAAGCTCATTCTCTACTTCAAGAGGAGAAACCACGCTCGCAAGCAATGGgagcagaAGTTTTGTCAGCGCTATGACCAGCTGATGGAGGCTTGGGAGAAGAAGGTGGAGCGCATAGAGAACAACCCTCGGCGCAGGGCCAAAGAGAGCAAAGTGCGCGAGTACTACGAGAAACAGTTCCCCGAGATCCGCAAACAGAGGGAGCTGCAGGAACGCATGCAGAACAGGGTGGGTCAGCGTGGTGGTCTGGCCTCTGCAGCACGCAGCGAACACGAAGTGTCTGAGATCATAGATGGCATTTCAGAACaagagAACTCGGAGAAACAGATGCGTCAGTTGGCCGTGATCCCGCCGATGCTGTTCGACGCCGAGCAGCAGAGGATaaagttcattaacatgaacggTCTGATGGACGACCCCATGAAGATCtacaaagacagacaggtgaTGAACATGTGGAGCGACCAGGAGAAAGACACCTTCCGAGAGAAattTATCCAGCACCCTAAGAACTTTGGCCTGATAGCCTCCTACACCACACTTAagacTGTGGCAGAGTGCGTCCTCTTCTACTATCTGACAAAGAAGAACGAGAACTACAAGAACATCGTCCGCAGGAACAACCGCCGCAGGGGCCGCAGCCAGaataaccagcagcagcaacagcagcagcagcaacaacagcagcagcagcagcagcagcagcaacagcagcagcagcaacagcagcaacaggTGAACCGCAACAAccaggaggagaaagaggacaAGGAGgcagagaaggagggagagcgAGACGAGGACAAGAACGACGCAGATGACAAGGAGGATGGCATAAAAGATGACACGTCAGGAGAGGACGGTGAAGATAAAGATCCTCCTGTAGCCATTAAAGGACGTCGCACAGCCAACAGCCGTGGCCACCGAAAAGGCAGAATCACTCGCTCCATGGCCAACGAGCAGGAGGAAAGCAGCTCTCCTCCTCTCAGCGGGGAACTGGCAAACCTGGAGATGAACGAAAGCTCTCGCTGGACAGAAGAGGAGATGGAGACTGCCAAGAAAGGACTTCTCCAATATGGCCGCAACTGGTCGTCCATCGCCAAGCTGGTGGGCTCCAAGACCGTCTCACAGTGCAAGAACTTCTACTTCAACTACAAAAAGAGGCAGAAACTGGACGAGATCCTGCAGCAGCATAAAATGAAATCGgagcaggAGCGTAAGGCCAGGCGTAAAGGTAAAGCTCTGCAGAACGAGGAGACCAGCGCTCCCTCTGCTGCTGATGAagaggagatggagggatcCGGGGGCAGCGGCAACGAGGAGGAGGCTCAGGAGGATGGAGAGGGAGGCCCTAACCAGAGCTCAGATACAGAGAGCCTCCCGTCCCCGCACTCCTCAGAGAGCAGCAAGGTCAAAGATTCTAGCTCGGGCCGCTTTAAGTCTGCACCTAACACCACCTCTGCGTCGGCATCTTCCTCTGACAAAGATGCACCAGAGGAGGAGAAACCACAAGTCAAGTGCGAGCAGGGAGCCGTGAAGCAGGAAGAGCGGCCCGAGGGAACCGACGGAGCGAAGGAGGTGCAAGGGGAGGTCGAGGATAAGAAGCCTCCCACTCTGGAGGTGGAAGAAGTtaagagagaaggaaggaaaagagagagggagcatGGAGGACGAGACAGCGACTCCAGCGCTACCTGCAGCGCCGATGAGGTGGAGGAGACGGACAACACGGAGAAGAACAGaaTAACATCTCCTAGGCCGAGTCTGCTGAGTTATGCCCACGATGGAGTGATCTCAACTGCACTGCAGAAACCACTGGACCTCAAACAGCTCAAACAGAGAGCGGCCGCTATACCTCCCataATGCCGGACATTTCTGTAGCCGGTGCTGGCGTTTTGGGGAAGCAGCAGGTGATGCCCGACGCTCAGGCGCTCTACGAACAGCAGATCATCATGGCACACGAGTCCTCCCAAGGAGCCAAGCAGCAGCCTCCGCAGCCAATCAAATCGCAGCATTACCCCAGCAGCATGGCTGAGGCCGGTAGCCCACGGATCCTAGCCAGAACACCCACGCCctcggagagagagaaagaggAACTGGAGGGGGGGAAGGAAAGATGGCTACACACTCTGCTTCACGGATTACataAACCCCGAGCATTCTCTCCTCTTGCTGATGTGAAGAAAGATCCGGGCCCAGACCACATCAGAGCCATGGGTCTTGGTCGTCCTGTGATGTCACCGTACCAGCTTTCTTCCAGAGATTTGGCCAAGCTGAGCCATGAACAACTCCTGCACTACAACTCCTctcCTTCTCAGCAGGAGAGGCTGGCTGGTGTACGGCCGCAGCACATCCCCGATCCTCCTCCCCTCATTTCCTCGGCCAAACCAGGCGGCTCCATCACACAGGGTACTCCAGTGCAGATGCACAGCCCCGCCCACGGCTCCGAGCACGCCAAGATGACTCCAGGAGCTCTGCCTGTGTCCTGGACGGAGCAGCGGAAACTCTCCGGGTTCCCCGTGGTTAAACAAGAGCAGCTGTCTCCACGTGGCCCCGCCTCCTCTCAGGCTGAGAATCTGTCCACACATGCTATCGCTCATGAGAGCCTCGCTTCTCGCGggcCCATGCCAGCTGTACAGGGAGGAAGCATCACAAAGGGCCTTCCTGGCACGCGCATCCACCAAGATTCCTCCATAACATACCGTGGTGGTTCCATCActcagggcACCCCGGCAGAAGTGCTGTATAAGGGTACCATTACTCGTCTTATCGCAGAGGACAGCCCTAGCAGGGACAGATCCAGAGACGAAAACCAAGCCAAGGGACACGTTCTGTATGAGGGCATCAGTGGACACATCCTCTCCTATGAACGCGCTCTGAACCCAAAGGACGAAGGCAGGGGAGAGGTGTTAGGGCTGAAACGCTCTTACGACGTCATGGACGGTGGGGGCATCTCTCGAGTGCTGCCGTTACGGGACTCTCTGTCCACTGCTGAGGGTTTGATGTGTAGAGCAATGcctcaggagagagagagtcctcGTCCTCATCATATCCGCGGCTCTATCTCACAGGGTATCCCACGTCATGTAGAGTCCCAGGAAGAGTATTCACGACGAGAGCCGAAGCAGCTGAAGCGCGAGAGCTCTCCGTCTCCCCGCGGCCCTGACGCTATTAAGGGCCGCCCCCACGACAGCCTAGTGCCCACGGTTAAAGAGGGCGGACGCTCCATCCACCTCATCCCGCCGGAGGGTGTGCTGATGAGCAAAGCACCTAAAGAGGGCTCCATCACACAGGGCACGCCTCTCAAACTGGAGACCGCGGGTTCATCTAAACGCCACGACGTGCGCTCCATCATATCCAGCTCTCCTCGGCCGTACTCTGGTCTCCCACCTCATTTGGAGAGGGGCCACTACGACGAGCCGGGCCCCAAATCTCGGCCTAGCGCTGTGGTCAGCACCTCAAGCTCCCTGGTGCTGGGGGCAGAACAGGCGGGCAAAAGTCACCACAGCCCGGTGGGCTACGACGAGCACAAGAGAGCAGGATATGCGGCACCTTCACACCGAGGATCCCCGCTGGCCAGCAGAGACACGCCGCAGCGGCCACACGAAGGCTCTGCGAAGGTCCCTCAACAGGAGAGGAAGTCCACTCCCACTCCTCGGGAAATGAGCTCTACCAAGTCTCCGCTGCCTGTAGTGGGGGATCACGCTGCCTCTCTGGCCTCCTATGAGAGGCTGCTGCAGGGTCTGGGAGCCGATGTGTACCGAGGACAGATACCGCTGCCGTTCGACCCCGCCGCCCTGCCCCGGGGCATCCCTATAGATCCAGCTGCTTATTACCTGCCTCGACACCTGGCTCCCGCCCCTGGTTACCCCCACCCCTATCCCCCTTATCTAATCCGGGGCTTCCCTGACACAGCAGCCCTTgagaacagacacacactcttcaccgaCTACATCACCTCACAGCAGATGCACCAGTGGCCTGCAGCAGCTATGACACAGAGATCAGACCTACTGAGAGGGCCCCGAGACCCACCGCTCACTTTACCGTACTCACCTACAGCACgagGAGCGTCTGCATCACCAATGGACCGCATGAACTACCTCCCTGGCGCTCCAAACACTTTCCCCAGCCGTGCGTACACCACCTCACCGATCTCacctgTCGGAAGCTCACACATAAGCAAACTCCAGGGCACACCGACGTCATccgagagagagcgcgagagagagcgtgagcgcgaaagagagcgcgagagagaccgggagagagagcgagaccgAGAGAGGGAacgggagagagaaagagaacgagagcgggatagagagagggagagggagcgagagagggagagagagcgggatcgagacagagagagggagaagtcTCTCGGCCATGGCAATGTGGAGCACGCCCCCATCTGGAGACCCGGAGCAGCAGAGCAGACTGGGAGCAGCAGCTCCAGCTCGCGTCCTCCTTCCCTGCCTTACAGCCACCAGGTGTCCCCGATGAGCCCTCGGCCCCAGGACAGCCTCCAGCACAGACCCACTGTCCTGCACAACACCAGCTCGAAAAACCTGCAGAGTTCAGAGCACAGCAGCCCGTCTGTACTGAgGTCTGTGCCACAGAGTTCTTCACGTTACCCAAACTACAGCGGGCACCTCCAGAGAGCCAGCGAGGCCTATCCAGACTCGAGCGGGGTCAAAGAGCTGAGCCGGGAGCTGAGTAAGACCCAGAGTCGCGGAGTTCTGCCCAAACACCAGGAGCCCAAGTCCGAATCCAAGATGTCCAGCCCGAGCGGGGGCGGAGTTTACCCCTCGGCCTTCGCCCAGGCCCCCGGCGGCCATGTGGGGCTCACAGCAGGCCGTGGTCTTCCCATGATGGCTACCGAGAGTGGCATCATGAATAGGGATAAGACTCAGAACAAGGACCACGAGCTCCGTGCACTCGCTCAGCAGAAGGCTCTAGAGCAGcacagtgtgttttttattccaGAGGAGAGACTGTCTCCCAGCCAGCAGCCTCCATCCCCTGCTGTTAAAAGCTCCCAGAGAGTAGTGACCCTCGCCCAACACATCAGCGAGGTGATTAAGAAAGATTACATGCGTCAGTCACAGCAGGGGCAGGCAGGAGGCCAGCCTGTGTTTAGCTACCACAATTCCCCTGTGTTGGACCTCACTCGACCCCCAAGTGCCCCCCAGACGCCCTCGGAGCCGAGCGTCAGCAGCCGCTTTACCCCCGAGGGCTCCAACAGCGACAGAGACAGGATGAGAGACAGGTCTCCTCCTCAGAGTAAAGTGTCCCCAGTGAGTCTGCCCCCTGAGTGCATCGAGCCAGTCTCTCCACCAGGGGGCGTGTCCGAGCCGGAATCCCAGGCAGCAGCGTGTCCCAGCGAGCAAGCCGAGCAAGGGATGGGATCTCGCTCTCCCTCCAGCAGTTCCCAGCCACCTGCGTTCTTCAGCAAACTCACCGAGAACAACTCCGCCATCGTCAAGAGCAAGAAGGAGATGATTAAGAAGATGGTTGTGGGCAACGAGAATGACTTTAACTCGGGACAGCCCGGGACAGAGATCTTCAACATGCCTGCCTCTGCTACTGGAGggCCAGTGACCATGCGTAGCCAGCCTCCTCCAGACTCCAGTGGGAACACCATTGGCCTGGAGGCCATCATCCGCAAAGCTCTGATGGGGAAATATGACGAACAGGCGGACGAGCGCTCGCCCTCCAACTCCGGAccctctgctgctgctgctgatccACGCACTGAAGAGCCTTACTCACTGCCTGgtaAATCAAAGAGCAGCGGGCGCTCCAACGGCCGCAAGACAAAGTCTCCCGGTCCTGGACTGTCGGGAGGAGAGAGACCGTCCTCTGTGTCCTCCGTCCACTCCGAGGGAGACTGCAACCGCCGCACACCTCTCACCAACCGAGTGTGGGAGGACAGACCGTCATCTGCAGGCTCCACCCCATACCCCTGTAACCCCTTCACGATGATGCGTTTGCCCGGCTCGGTGATGTCCGGGCCCTCCCCGTCGCCCACGCAGCCCGCTGCAGGACCTCCACAGCCTCAGAGCCGAACCTGGGAAGAGGAACCCAAACCGCTGCTCTGCTCTCAGTACGAGACGCTGTCCGACAgcgagtgaacacacacacacacacacacacacacacacacctcctctatTCGCtcctttaaactttaaacaggGATGTGAatggatacacacacatgcacacacttagTGAAACACACTAGAGagcacatacacatgcaaactAATATGCATACCCTCATATTACTAATGCACTTCTCTtaagtacaacacacacacacacacacacacacacagatgtaccCTGGTGAAAATGGCTGCTCCAGAAGAGTACTCGTAAGCGTGTACACACCTGCACACCAACATTAGAGTGTGCCATCACTCCAAGACTGCTCATATTACAACGACaaatcactcttttttttttctttttcttttcctttcctggtGTCCTGGTCTTATCAGACTCGGGTATCACAGAGACTCCTCTCTCCATAGTACCGCTCAGGATCCTCACATTCTCACCTcttgctgacacacacacacacacacacacacacacacactcactatgcATTGCTGTTTTAAACCAATAATTTGGCTCCAAATGGAATGAACAAGTCGATCAGATTAGCTCGTTTGGTGTCTTTATTTCGCACTTGAGGGTTAATGTAGCTAAACAGTAAGGCTAGCTTCGAGCTGCTAGTGTTTATTCATTCGTATTGGTCATCTCAATCGTTTCTAACACACAGCTCCGCCTTAAACTTAAGGCCACGCCTCTTATCTGAGACTGATCCTTGCTACGTCCTGACTGTTAGCTGCTACGACTGTTTTTAGCTCTGcgtccgtttttttttttgtttgtttgtttttttttaaatacatatccTTGTGTCAAACCACTCCACAAAGCAGTTGATTGAGATGTGTAGCTTGAGTGATGCTAATCTGGTGGATATGCGCTTCCTTTAtttgctagctacattagcctgaACATATCTTGGCTCTAGTGTTTCAGTTTTGGCCCAAAATGGCTGCCGATGGCGTCGCTCGTTGCTTTTACAGACTCACAGTTTCACCACTTGAGCTTCTGAGGCACATTTTGAGGTACAGaggaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcgtttgTATACACTGATGCATGAATTCAGATTGAGAGAATGAACAAGCCAGTTCCAGTTTTCCTGTTCTGAAATACGTACATTCAGTCCAGAAACGCTCATGAagagtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgtgtgcgCGTTTTTCACTCTTTTCCATGGGCGTTAGTTTACAAGGtacataatgcatttttttaatgtcactgaTAACATtgcagtttctgtttttttttttaaacagcggTTTCAGACTCGTCTCTACtcgaacatttttttttttcatgaaagctgcgacgtgtttttttttgtgtgtgtgtgtgtttatcactaATTTGTTTGCGTCTCTTTTTATTAAAGCACTTGGCCAGCAGACGGTTCTTGTTGTCCCGTCATGGACGCTGattattcatttaatgttttttt

Function

symbol description
ncor2 Predicted to enable transcription corepressor activity. Acts upstream of or within hematopoietic stem cell differentiation; macrophage differentiation; and neutrophil differentiation. Is expressed in several structures, including anterior axial hypoblast; cardiovascular system; central nervous system; eye; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human NCOR2 (nuclear receptor corepressor 2).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K06065 NCOR2, SMRT; nuclear receptor co-repressor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306547.1 True 9018 mRNA 0.55 47 26889333 26989582

Neighbor

gene id symbol gene type direction distance location
ep400 ep400 coding upstream 32350 26819957 ~ 26856983 (+)
ulk1a LOC108265551 coding upstream 71540 26793066 ~ 26817793 (+)
adgrd1 adgrd1 coding upstream 101352 26735382 ~ 26787981 (+)
stx2b stx2,LOC108441897 coding upstream 269631 26604521 ~ 26619702 (+)
piwil1 piwil1 coding upstream 287093 26592058 ~ 26602240 (+)
ccdc92 ccdc92 coding downstream 89514 27079096 ~ 27100750 (+)
ogdha ogdha,LOC108411168,LOC108265558,LOC107756845,LOC107691557,LOC107566960 coding downstream 308310 27297892 ~ 27331548 (+)
ppiaa ppiaa,LOC108265559,LOC107691558,LOC107756846,LOC107722998,LOC107702873,LOC108411171,LOC107591938 coding downstream 343789 27333371 ~ 27338168 (+)
LOC113546107 slc18a1,LOC106527823,LOC107702874,LOC107591929 coding downstream 357799 27347381 ~ 27360862 (+)
tti2 tti2 coding downstream 373941 27363523 ~ 27370047 (+)
G139551 NA non-coding upstream 369851 26512892 ~ 26519482 (+)
G139235 LOC108265343 non-coding upstream 853200 26032594 ~ 26036133 (+)
LOC113546140 NA non-coding upstream 938884 25948849 ~ 25950449 (+)
G139172 NA non-coding upstream 1074292 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 1206242 25672518 ~ 25683091 (+)
G139686 NA non-coding downstream 117347 27106929 ~ 27108878 (+)
G139756 NA non-coding downstream 349411 27338993 ~ 27341506 (+)
G139807 NA non-coding downstream 570808 27560390 ~ 27569085 (+)
LOC113546137 NA non-coding downstream 614335 27603917 ~ 27610560 (+)
G140170 NA non-coding downstream 621365 27610947 ~ 27611335 (+)
rimbp2 rimbp2,LOC108414005 other upstream 159387 26626053 ~ 26729946 (+)
LOC117597788 NA other upstream 321401 26562820 ~ 26567932 (+)
car15 LOC108264895 other upstream 427012 26400191 ~ 26462321 (+)
LOC117597866 NA other upstream 972526 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 1330602 25551894 ~ 25558731 (+)
fam160b2 LOC108265858 other downstream 193439 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 277593 27267175 ~ 27295337 (+)
nr6a1a nr6a1,LOC107563838,LOC107721088,LOC107678448,LOC107698081,LOC107753334 other downstream 415868 27405450 ~ 27490461 (+)
G139781 NA other downstream 439145 27428727 ~ 27429477 (+)
dbnlb dbnl other downstream 848663 27838245 ~ 27859702 (+)

Expression


Co-expression Network