ptgesl (ptges2,LOC103370734,LOC104955211)


Basic Information

Item Value
gene id ptgesl
gene name ptges2,LOC103370734,LOC104955211
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2694963 ~ 2704063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306562.1
AGGGGTGACGTCAGAGCAAGATGGCGGCGTCCGGCGTGAGGAGCTTGGGGAAGGTCGGCAGGCTGCTTTCCCGCGGCGCGGCTTTCCCAGCAGTGACCCCGGGCCCGGTCCCCACGCGGCTGTGCGCGCGAGCTCACGGCGGCTTCCCACGCGCCTTCCCACGCGCCTTCCCACGCGCTGCGACGCTCAGGTGTGTGTTCCTGCTCGGAGGTGGACTCGGTTTGTACCACAGCGTTAAACACTCACTGCAGAGACACCACGCAGAGCAGCAGCAGgcaCCGGATCCTGGATGGGATCTGAAGCTGACGCTGTATCAGTATAAAACCTGTCCGTTCTGCAGTAAAGTGCGCGCCTTCCTGGACTATCATGGCCTCCCGTATGAAGTCGTGGAGGTTAACCCCGTCATGCGGCAGGAAATCAAGTGGTCCACGTACAGGAAAGTTCCCATCCTGATGGTGAACGAAAGCATCCAACTGAACGACTCGTCTGTCATCATCAGCGCTCTGACGACGTACCTGATcagcagGGAGAAGAGCGTTCCTGAGATCGTGGCCTGCTATCCGGAAATGAAGGGGAAGAACGACAGCGGGAGAGAGGTGACCGAGTTCGGGAACAAGTACTGGGTGATGGTGGACGAAACCAAACACGTGCAGGTCTATCCAGAGAAGACGTCCAGGCAagaggaaataaaatggCGTAAATGGGCAGACGACTGGCTGGTGCATCTCATCTCCCCTAACGTGTACCGGACCCCGGCCGAGGCTCTGGCTTCCTTCGACTACATCGTCCGCGAGGGAAAGTTCGGCACGTTCGAAGGCTTCTTCGCCAAGTACGTAGGAGCGGCGGCCATGTGGCTCATCTCCAAACGACTCAAAAACAGACACAACCTGCAGGATGACGTGAGGCAGGACCTGTACAAGGCAGTGAACGACTGGGTGGCGGCCATcgggaaaaataagaaattcaTGGGAGGAGAAAACCCCAATCTCGCTGatctgGCGGTGTTTGGGGTTCTGAGGGTCATGGAGGGTCTCGAGGCTTTCGACGACATGATGGAGAACACGAAAGTGAAGAAGTGGTACAGACGCATGGAGAACACCGTGCGCCATCATCCCAAATGATCCACACCCCTTCGGTTGCGTCTGAAACGGTTCCTTTTACAGAATTTAACGGCGTCAGGTGTGAAGCCAATCGGGAGAATGCGGTGTAAATGAATGTACAGAAAGTTCAGCTGAGGAAACATCTCCTAATTCCACAATCAGCAGTGTGAGCTTCTGGGCCTTTACTGTACACTTCATCTGGGTAATACTGTGTCTGATTATAGTAATTTATTCCTGTCTGTCTCCGTTATGCTGTTAATAAGGAGTAACAAGAGCAGCAATAAAGAGCAATAAGGTCTGAACTGACTTTACTCGCCAGGTTGTGAGAATTATAAAGTCATGGCGCCCCTTTGACTGTAATCAGTGCACATTATCAACTAAGCATCAGACGtgtgacacaaaaaaaaaataaataaatgaaaaatctctGAAACAAA

Function

symbol description
ptges2 Enables lyase activity and prostaglandin-E synthase activity. Involved in lipid metabolic process. Located in Golgi membrane; cytosol; and mitochondrion.

NR:

description
prostaglandin E synthase 2-like

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0006693 prostaglandin metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0043295 glutathione binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K05309 PTGES2; microsomal prostaglandin-E synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306562.1 True 1537 mRNA 0.53 7 2694963 2704063

Neighbor

gene id symbol gene type direction distance location
LOC117597819 NA coding upstream 52357 2640711 ~ 2642606 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding upstream 276008 2409325 ~ 2418955 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding upstream 306018 2369339 ~ 2388945 (+)
ccdc181 ccdc181 coding upstream 328718 2360954 ~ 2366245 (+)
prrg1 prrg1,LOC108265743 coding upstream 347504 2337341 ~ 2347459 (+)
npl npl coding downstream 193236 2897299 ~ 2906546 (+)
LOC113535040 NA coding downstream 202662 2906725 ~ 2910360 (+)
sec22bb sec22b,sec22bb,LOC108265393,LOC101168279,LOC100705437,LOC103354218,LOC108439390 coding downstream 216803 2920866 ~ 2926332 (+)
notch2 LOC108265554 coding downstream 247358 2951421 ~ 3031725 (+)
slc35a3a slc35a3,LOC108439387,LOC100705874,LOC102790943,LOC101471768 coding downstream 332166 3036229 ~ 3055064 (+)
G125483 NA non-coding upstream 18972 2672943 ~ 2675991 (+)
G125497 NA non-coding upstream 43711 2649689 ~ 2651252 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding upstream 262314 2431726 ~ 2432649 (+)
G125332 NA non-coding upstream 268632 2421558 ~ 2426331 (+)
G125362 cpox non-coding upstream 336142 2357213 ~ 2358821 (+)
G125484 rgl1,LOC107717560 non-coding downstream 1778 2705841 ~ 2745563 (+)
G125482 NA non-coding downstream 3901 2707964 ~ 2709659 (+)
G125509 LOC108265600 non-coding downstream 14969 2719032 ~ 2721882 (+)
G125525 NA non-coding downstream 37935 2741998 ~ 2742284 (+)
G125593 NA non-coding downstream 150694 2854757 ~ 2855775 (+)
alkal1 LOC108265007 other upstream 462823 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 707391 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 888173 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1348378 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1493037 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 141646 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 632317 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 740952 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 980830 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1046441 3750504 ~ 3777490 (+)

Expression


Co-expression Network