LOC117597813


Basic Information

Item Value
gene id LOC117597813
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 216161 ~ 217382 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306570.1
TTCTTcaatctcttcctcttcttcctccaaacAGAGTCCGAGTAAAGACGACACAAACCTTGTGGCAAGTTCTCCACAGATGCATTTATCGAAAAGCAATGGAACACCTCGGCCTTTAAACAACAACTCCGATAAGACCAAGGGGGAGCCGACCCAGGGGGATAGGAagcaggagaggaaggaggTGATGAATGGGTCTACAGAAAGGAAGACCACGTCCTTGAGAAAAGCCCGATCTGAATCCTCCCTTTCCCTTTCCCCTTCCTCTTTCTCGTTGACTCCCCTGCATGTGGAACATCCGGACAGGGTGGAGCCccaaataaaaacctgtgaagtGAGGAACCATTGGGTTCCTACTAGACATCCTAACACCACTAGAAAGATTGCAGATTGGACACTGGAAGTAAAGAAACCAGTTTTGTTTATAGGGGACTCCAACCTGTCCAGAATTCCCTATTTTAGTGACGAAAATGTTCAGGTGGATAGTTACCCTGGAGCCAACTTTTTACATATAGCCAAGGTGTTACAAAAATTAACCCCTAATCCAAACACTCAAAAAGTCGTCCTATCATTAGGAATCAATAATAGAGAACAAACATTCGAaagtacaacaaaaaaacagttgcaAGAGCTGTGGAGAATTGCTGCAGTGGTTTTTCCCAATGCCACGATCTACACCCCATTATTAAACTACTCGGATATCCTACCTAGACGACAACAAGAAACTCTAACAAAACTGAACACTCATATACTGGCACATGGTAATCCATTGCAGGAACTTCACCCACTTAGGTTCAAGGTGAACCCGAGGGACCCTATCCACTGGACCACGGAAACGGCTTCgcaaaatgtttacatactggTTGGATCAGTTAAACTTTTAGGAATGGTGAAGTGcaataaaacagacaacaaaaagcACACCAACATCATTAACCTATCCAAAACGTTTTGTCTCACAGGTCCGCAGGAGGATTTACTCAGCAAGGGTCTCACCTTCATCCCGGCGCCATGCGATGCGGACTTGGGGAGCTGGGGAGGGATGTCCACGCTTACAATAGACAACTTAAAATTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306570.1 True 1078 mRNA 0.45 2 216161 217382

Neighbor

gene id symbol gene type direction distance location
ipo11 ipo11 coding upstream 195523 112 ~ 20638 (+)
LOC117597814 NA coding downstream 44017 261399 ~ 264259 (+)
fpgt fpgt coding downstream 117521 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 125280 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 193607 410989 ~ 456088 (+)
LOC113541233 nceh1 coding downstream 250379 467761 ~ 478047 (+)
LOC117597786 NA non-coding upstream 6748 208161 ~ 209413 (+)
G124451 NA non-coding upstream 15218 197931 ~ 200943 (+)
G124432 NA non-coding upstream 18963 154481 ~ 197198 (+)
G124444 NA non-coding upstream 34494 180416 ~ 181667 (+)
G124437 NA non-coding upstream 48862 165164 ~ 167299 (+)
G124481 NA non-coding downstream 124056 341438 ~ 341758 (+)
G124499 NA non-coding downstream 183533 400915 ~ 402096 (+)
G124506 NA non-coding downstream 218780 436162 ~ 436973 (+)
G124511 NA non-coding downstream 244130 461512 ~ 466459 (+)
G124512 NA non-coding downstream 246197 463579 ~ 464969 (+)
G124442 NA other upstream 37744 177662 ~ 178417 (+)
G124403 NA other upstream 130078 70073 ~ 86083 (+)
G124399 NA other upstream 165089 48978 ~ 51072 (+)
G124387 NA other upstream 192869 12688 ~ 23292 (+)
G124462 NA other downstream 55035 272417 ~ 330399 (+)
G124498 NA other downstream 182374 399756 ~ 407434 (+)
si:ch73-70k4.1 LOC108265358 other downstream 289682 507064 ~ 508910 (+)
cept1a LOC108265319 other downstream 388477 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other downstream 428584 645966 ~ 647953 (+)

Expression


Co-expression Network