LOC117597814


Basic Information

Item Value
gene id LOC117597814
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 261399 ~ 264259 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306571.1
GATTCTTATCAGCATACTCATGGGAGTCCGAGTAAAGACGACACAAACCTTGTGGCAAGTTCTCCACAGATGCATTTGTCGAAAAGCAATGGAACACCTCGGCCTTTAAACAACAACTCCGATAAGACCAAGGGGGAGCCGACCCAGGGGGATAGGAagcaggagaggaaggaggTGATGAATGGGTCTACAGAAAGGAAGACCACGTCCTTGAGAAAAGCCCGATCTGAATCCTCCCTTTCCCTTTCCCCTTCCTCTTTCTCGTTGACTCCCCTGCATGTGGAACATCCGGACAGGGTGGAGCCccaaataaaaacctgtgaagtGAGGAACCATTGGGTTCCTACTAGACATCCTAACACCACTAGAAAGATTGCAGATTGGACACTGGAAGTAAAGAAACCAGTTTTGTTTATAGGGGACTCCAACCTGTCCAGAATTCCCTATTTTAGTGACGAAAATGTTCAGGTGGATAGTTACCCTGGAGCCAACTTTTTACATATAGCCAAGGTGTTACAAAAATTAACCCCTAACCCAAATACTCAAAAAGTCGTCCTATCATTAGGAATCAATAATAGAGAACAAACATTCGAaagtacaacaaaaaaacagttgcaAGAGCTGTGGAGAATTGCTGCAGTGGTTTTTCCCAATGCCACGATCTACACCCCATTATTAAACTACTCAGATATCCTACCTAGACGACAACAAGGAACTCTAACAAAACTGAACACTCATATACTGGCACATGGTCCGCAGGAGGATTTACTCAGCAAGGGTCTCACCTTCATCCCGACGCCATGCGgttCAAGGAACCGCTATGGGGAAGAAATTTGCTCCAGCCTCTGCGAACATTTATATGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306571.1 True 867 mRNA 0.45 5 261399 264259

Neighbor

gene id symbol gene type direction distance location
LOC117597813 NA coding upstream 44017 216161 ~ 217382 (+)
ipo11 ipo11 coding upstream 240761 112 ~ 20638 (+)
fpgt fpgt coding downstream 70644 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 78403 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 146730 410989 ~ 456088 (+)
LOC113541233 nceh1 coding downstream 203502 467761 ~ 478047 (+)
tnfsf10 tnfsf10,LOC108261837,LOC107663625,LOC107590350 coding downstream 226186 490445 ~ 494112 (+)
G124453 NA non-coding upstream 30531 207271 ~ 230868 (+)
LOC117597786 NA non-coding upstream 51986 208161 ~ 209413 (+)
G124451 NA non-coding upstream 60456 197931 ~ 200943 (+)
G124432 NA non-coding upstream 64201 154481 ~ 197198 (+)
G124481 NA non-coding downstream 77179 341438 ~ 341758 (+)
G124499 NA non-coding downstream 136656 400915 ~ 402096 (+)
G124506 NA non-coding downstream 171903 436162 ~ 436973 (+)
G124511 NA non-coding downstream 197253 461512 ~ 466459 (+)
G124512 NA non-coding downstream 199320 463579 ~ 464969 (+)
G124442 NA other upstream 82982 177662 ~ 178417 (+)
G124403 NA other upstream 175316 70073 ~ 86083 (+)
G124399 NA other upstream 210327 48978 ~ 51072 (+)
G124387 NA other upstream 238107 12688 ~ 23292 (+)
G124462 NA other downstream 8158 272417 ~ 330399 (+)
G124498 NA other downstream 135497 399756 ~ 407434 (+)
si:ch73-70k4.1 LOC108265358 other downstream 242805 507064 ~ 508910 (+)
cept1a LOC108265319 other downstream 341600 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other downstream 381707 645966 ~ 647953 (+)

Expression


Co-expression Network