dedd (dedd,LOC108265722,LOC108411641,LOC106572035)


Basic Information

Item Value
gene id dedd
gene name dedd,LOC108265722,LOC108411641,LOC106572035
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1809014 ~ 1811333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306587.1
agtgtaAAATCAACGCCAGCAGGTTGAttatagcatagcatagcatagcatagcttAGCTTAGCATAGCTATTACAGGGTTTTGTCTCCAAACTGTTAGTttgtaaaatatgattttataacTTGTTTATTCGTCACTCGAATTATtactgactgaaaaaaaataatatacattgtCAGCAAATCAACTTTATTACATCAGCGACGCTAGCTTAGCTTGTCATGCTATACAGTaaaactagccagctagtcGCATAGCTTACTGCGTTGCTATGGTACCAAAAGACCTAAAATAATGTCGACTATCTCAATTAAATAGCAGGAAGCTATTGAGATTAAGTAGTTatcttgttttttgtgtgttcttcTCCATCGGTGTGTTGTTATATCGAGTGAAGCTGGAGGCGAGAGTCGGGCACCGCGTGTGCAGAATCCAGCCCTGATTTCCGGGAAATCCCATCATCCTGCGTCTCCGTCCTCGTGGCGCAGAGTGATGACATCACAGCGGCAAAGGCATGCCACTTCCCGTGCTCTTCCCGCTCCACAGAACTCCTCCTCGAGGAGCTCGAGCTCACGCTCAGGATCCTCGGCTTCACACGTGCAGCGCGCGTCTCGATCCGCGGCGTCTTCCTCTCGCTCTGACCACACGTGGCCGGAGGAGGCGGTGGACGACGCGTACGGTCTTTACTCGCTGCACCGCATGTTCGACATCGTCGGGACTCACCTCACACACCGCGACGTGCGCGTCCTCTCCTTCCTGTTCGTGGACGTCATCGACGAGTACGAGCGCGGCGGGATACGGGACGGACGGGACTTCCTGCTGGCGCTGGAGAGACAGGGACGCTGCGATGAGACGAACTTCCGGCACATTCTGCAGCTGCTGCGCATCATCACCAGACACGACCTTCTGCCTTACGTCACACTGCGCAAGAGACAGACGGtgtGTCCAGACCCGGTGGATCAGTACTTAGAGGAGACGTCTGTGCGCTACATTTTTCCCCGAGGAAGCAGAACAGAGAGTCCACAGGTCACGCCGCACAGAtgcgcagGTCCACAGCCTGTGATTCGTTGCCCCTCTCCTGAGGTGTGTCAGCCCCGCCCCAAACCGGCCACGCCCACTCcaaacaggaagaggaagcGAGCTCACAGTGCGGCGGACTGCCGGGAGAAACAGACCtgcgATATCCGTCTGCGTGTACGAGCGGAGTACTGCCAGCACGACTCGGCTCTCCAAGGCAACGTCTTCTCCAACAAGCAGGAGGCCCTGGAGCGCCAGTTCGAGCGCTTCAACCAGGCCAACACCATCCTGAAATCGCGCGACCTCGGATCCATCATCTGCGACATCAAATTCTCCGAGCTCACCTACCTGGACGCGTTCTGGCGCGACTACATCAACGGCTCGCTGCTGGAAGCGCTGAAGGGCGTCTTCATCACAGACTCGCTGAAGCAGGCCGTCGGCCACGAGGCCATCAAACTGCTCGTCAACGTCGACGAGGAGGACTACCAGGCGGGCAGGAGGAAGCTCCTGAGGAACCTGATGatggggggaggggggggggCGGGGCTAGGGTCAGGGTCGGCTGGCCAGGGGGCGGGGACttcataa

Function

symbol description
dedd Predicted to enable DNA binding activity. Predicted to be involved in extrinsic apoptotic signaling pathway via death domain receptors. Predicted to act upstream of or within apoptotic process and regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be active in nucleolus. Orthologous to human DEDD (death effector domain containing).

NR:

description
death effector domain-containing protein-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306587.1 True 1605 mRNA 0.55 5 1809014 1811333

Neighbor

gene id symbol gene type direction distance location
bgna LOC108265721,LOC107577956 coding upstream 6341 1789630 ~ 1802673 (+)
si:dkey-6n6.1 LOC108265720 coding upstream 24922 1775656 ~ 1784092 (+)
rhoaa LOC108265463,LOC108411640,LOC103028705,LOC107599000,LOC103466989,LOC105890655,LOC108438067,LOC103154239 coding upstream 43972 1759988 ~ 1765042 (+)
ndufb11 ndufb11 coding upstream 49678 1755525 ~ 1759336 (+)
def6a def6,LOC107757990,LOC107550223,LOC107700524,LOC107599059 coding upstream 55733 1726808 ~ 1753281 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding downstream 8858 1820191 ~ 1851550 (+)
LOC113535241 LOC108265201 coding downstream 42039 1853372 ~ 1876515 (+)
tab3 tab3 coding downstream 478118 2289451 ~ 2304783 (+)
prrg1 prrg1,LOC108265743 coding downstream 526008 2337341 ~ 2347459 (+)
ccdc181 ccdc181 coding downstream 549621 2360954 ~ 2366245 (+)
G125129 NA non-coding upstream 45689 1762304 ~ 1763325 (+)
G125119 NA non-coding upstream 112753 1686319 ~ 1696261 (+)
G125117 NA non-coding upstream 186009 1621257 ~ 1623005 (+)
G125116 NA non-coding upstream 190144 1617620 ~ 1618870 (+)
G125098 NA non-coding upstream 216121 1543836 ~ 1592893 (+)
G125144 NA non-coding downstream 21 1811354 ~ 1813285 (+)
G125208 NA non-coding downstream 149271 1960604 ~ 1993404 (+)
G125239 NA non-coding downstream 247984 2059317 ~ 2256786 (+)
G125276 LOC108265808 non-coding downstream 358228 2169561 ~ 2171015 (+)
G125312 NA non-coding downstream 440109 2251442 ~ 2252516 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 2224 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 462429 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 607088 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 696947 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 987647 777964 ~ 821367 (+)
LOC113535242 glis1 other downstream 65695 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 404769 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1034376 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1525047 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1633682 3445015 ~ 3537289 (+)

Expression


Co-expression Network