LOC113535241 (LOC108265201)


Basic Information

Item Value
gene id LOC113535241
gene name LOC108265201
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1853372 ~ 1876515 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306588.1
CCAAGTGCAGGAACACAGTAGAGAAGAAGCAGCAGCTGATCTGCACTGCTGCTTGATCCTGGTCTGCGTTCTGGTTCTCACTTTGCAGAATTACGCTCTTCTGACCTCTGATAATGAAAGCAGGAGGAACCAGGAGGCGCTCTTTAAGGAGCTCTGCATGCTCCCCTGGACCTTCTCACCCACAGGTTGTGAAGACAGAAGAGTCTGCAGATGGAACGAGAGCAAGCTCTGTGGGACACGTCAACTCTGCGGACAGAGAGAATGGAGGATTCCTGAAGAAACCTATAAAAAAGGAGGAACCTGAAGATGAAGACTACCTTTACTGTGAGTACTGCAGATCCTTCTTCACCAATGAGTGTAACGTTCATGGTCCAGCTGTGTTTGTCTCTGATACTCCTGTTCCCATGGGAGTCACTGACCGAGCCGTACAAACCCTTCCACCCGGTCTGGAGGTTCAGACGTCCCGTATTCCTGACGCGGGCCTGGGAGTGTTCAATAACGGCGAGATTATTCCTGTTGGTGTGCACTTCGGACCCTATGAGGGAGATCTGGTAGACAAAGAGGAAGCCATGAGCAGTGGCTACTCGTGGGTGATATACAAGAGCAAGCAGTGTGAGGAATACATAGATGCCAAGAGAGAGATGCATGCTAATTGGATGAGGTATGTGAATTGTGCTCGTAATAACGATGAGCAGAATCTGGTGGCTTTCCAGTATCAAGGGGGGATTCTGTACCGTTCCTGTCGTCCCATTAAACCAGGACAGGAGCTCTTATTGTCATATGAAGAGAAGTATGCCAAAGATCTCGGCATCACCTTCGACTACATCTATAACAGAAAGTGCTCAGTGAATGgagagaagcgttatcactgctcacagtgcaGGAAGAATTTCAGCAGACATAGTCATCTCCAgcgacaccagcgcattcacacgggagagaagccgtatTACTGCTCACAGtgcgggaagagttttactcagCAGAGTCATCTGCAACagcaccagcgcattcacacaggagagaagccgtatcactgctcagagtgtgggaagagttttacagGACAGAGTCATCTTCAGGTACACCAGCGTGTTCACACAGGCGAGAAGCCGTACCAGTGCTCGCAGtgcgggaagagttttactGAGAAAGGCACTCTCAAGgcacaccagcgcattcacacaggagagaagccgtatcactgctcacagtgcgGGAAGTGTTTTACTGAGAGAGGGAGTCTCAAGACACACCAACGCGTTCACACCGGAGAGAAGCCGTTTTACTGCTCAGAGTGCGGGAAGAGTTTTACCGAGAGAGGGAGTCTCAAAACACAcgagcgcattcacacaggagaaaaaccGTATCATTGCTCAGCATGTGGACAGAGATTCACTTactctgtaacattaaaaacacacaagtgcACCAACGCGAAACCATTGCATTCTGAATCCTGGccactcactcctcactccagCCCAGTAGGTGGTGCTCCTGAGCTCTATAAGGGCTTCACCAACCCCAGAAAAACGctaaagaagcagaagaagcagaagaacagaagCAGCAGTGGCTCTCCAGAGCGACCTCTGGATCTGTGTCCACTTTCTCCATCTGAGCATCACATGTGCACTTTGCATGAAGTGTGCAGTGAGGATTGCAGTGAGGATTATTTGCGCCAGTTTGGACCTGTTATAAtggaaccagaaccagaaccagaaccactGGACCCCAGCACCACTGCATGCACACCTGGTCCTGAGCACTCACAGCTTTGTGAGGCTGTGACGACCCCTGTGGATGACGAGCATGGAGGATTCCAGAATAAACCTGTAAAAAAGGAGGAACCTGATGACCAAGACTGTCTTTACTGTGAGCTCTGCAGATCCTTCTTCACCAGCGAGTGTAATGTTCATGGTCCAGCTGTCTTTGTCCCCGATACCCCTGTTCCCATGGGGGTCACTGACCGAGCCATACAAACCCTTCCTCCTGGTCTAGAAGTTCGAGAGTCCAATATTCCTGATGCAGGCCTGGGAGTGTTTAATAAAGGAGAGATTATTCCAATTGGTGTGCACTTCGGACCCTATCAAGGAGAAGCTATGAACAGTGACTTCTCTGTGGTGATATACAGGAGAAAGAAGCGTGAGGAATACATAGATGCCAGAAGAGACAAAAATGGAAACTGGATGAGgtaTGTGAATTGTGCTCGTAATAATGATGAGAAGAATCTGGTGGCATTCCGGTATCAAGGGGGAATTCTGTACCGTTGCTGTCAACCCATTAAACCAGGACAGGAGCTCTTGCTGTCATATGAAGAGGAGTATGCTGACGATCTCAGCATTACGTTTGGTTGCCTCAGTAACAAAAAGTGCACAGACAATGAAATGAACGGCACCCTGCAAGTCATCTCTTGCTCCTTTTGTCCACTTTGGTATACATCTCAAATTGATCTACACAAACATGTTCAGAGATGCCAcagtgaagaatatgagagactGCAAAAATCAGAAGAGATTAAACATGAGAATCTAATACTGACGAGAAGTCCCAGTAGTCAGTGCGACGAGTACCGTAAGATGCAGGCTAACACCATTCCCAgacaaatgcagaaaaaaattcacCACTGCTCAGACTGTGGCAAAAGTTTTACTCAACAAAGTCAACTCAAGGAGCACCGgtgcattcacacaggagagaaggtGTATCAGTGCccagagtgtgggaagagttttattcGAGAGAGTATTCTCAAACtgcaccagcgcattcacacaggagagaagccgtatcagtgcACACAGTGCGAGAAGAGTTTTACTCAGCAGAGTTCTCTCCAACAACACCAGCGCACTCACACTGGGGAGAAGCCATATCACTGCTTAGAGTGTGGGAAGAATTTTACCCGACAGAGTCATCTCCaacaacaccagcgcattcacacaggagagaaaccgtatcactgtgcacagtgtgggaagagttttaatcgAGGGAGTTGTCTCCAACAACACCAGCGCactcacacaggagagaagccgtatcactgttctcagtgtgggaagagttttttTCGAGGGAGTCATCTCCAAGAACACCAACGTGTTCACACGGGAGAGAAACCATTtcagtgctcacagtgtgggaagactTTTACTTACCATAGTACTCTCCAAgaacaccagcgcattcacacaggagagaagccgtatcactgcaaacagtgtgggaagagttttagtCACTACAGCTCTTTCCAAAagcaccagcgcattcacacgggAGAGAAGCCATATCAGTGCTCACAGTGCGGAAAGAGTTTTAATCAAGAGGGTATTCTCAAACAccatcagcgcattcacacaggagagaagccgtatcgcTGCTTAGCGTGCGGGAAAAGTTTTACCAGACAGAGTCATCTCCAGCAACAccaacacattcacacaggggAGAAACCGTATCAGTGCTCACAGtgcgggaagagttttactcacAGCAGTTCTCTCCAgcaacaccagcgcattcacacaggagagaaaccgtatCAGTGCTCACAGTGCGGCAAGAGTTTTACCAAACACAGTCATTTCAAAGtgcaccagcgcattcacactggagagaagccgtatcactgcttaGCGTGTGGGAAGAGCTTTACCAGACAGAGCCATCTGAAGCagcaccagcgcattcacaccggagagaagccgtatcagtgctcacagtgtggCAAGAGTTTTACTCACAGCAGCACTCTCCAAgtacaccagcgcattcacacaggagagaaaccgtatcactgctcacagtgtggacaAAGATTCACTCGTTTAAGAAGATTAAATACACACACGTGCGATACCACAAAGCCAGTGTGATGTGTTTTGACCACCAGTTGATTACACAAAGAGTGTATATAAATTGAGTTCCTGGTCTTTGAACAGACTGATCTTTCATTGCCTCTTCCTTCACTTTCTTATATTATTAGATATTGTTGACATTATAAACAACTTGTATATCcttttttgggtttttaatATGCTGTATTGATTTCTTTGTCTTGTAGAGAGCAGTACTTTGACTTCACAGTGATCACAAGGTTTGACCAactaaaaacatataataattaACTCcttaactttaattttttttccaatggcACATGCTGGAGATATGATGGGCCAAATGAATTCCTGCCTAAGAGCCTCCTAGATGTTCTCTATAGCGGCAGTCATCGTGACGGATGAGGAATAGATGCGGGAATGCTGAGTAGTCCCTGGCAACAAGTcaatagaagaagaagcctttatttgtcacatatacattgcagtacagtgaaattccttttttccagcttgttaggaagctggggtcggAGTGCAGTGTCAGCCATGGTATGGCACCCCTGGAGGCTCAACAGTGCAGCTTGGCAGttctggggcttgaacccctgaccttctgatcagtaactcaGAGCCTTAGCCATTGAGCCACCACAGCCCCATGAACAAACAATCCCAGGGTTGTTGTGGAGAAAGTTTGGCAACTTCTTGTTTATTCTGTAGGATACAGAATACAGATTTGGTATTCTGTAGGCACACTCCATTTGCTTATCTTCCAAGCTTTCTATAACGGTAGAGCTGCACTAGATCTGGACAAGCTGTTGGAGAACAAGCTGCTTATTTGTCCTCTTGACCAGTTTATCCTGGGATTGTGGTTGTTTTAACAAGGAAGGAAGACCTAGTATTATTTAGACCTAGTATTTTGAATTTTGATAATGTCTATGATCTCAAGTTCAGGGTTTTGGTATTCaggtctagaaaaaaaaacctacagctTGAATAAGTCGGGCAGATTCTATAGTCAGTAAAGGTCATATTCTGATATTCAGAAAACAATCTTCAGGATCTGGTAGTTGGTGTGATTGGAGAAAATATAGTATAAAGGACAAACAGTAGTGGACAAAGAACTGACACCTGAGGGACACCAGCATTAAAGTTGTGAGATAAGGAATTAATACTTAACCTTGGACACATTTGTCTTCAATGTGAATGGCTGGCTGATTCACAACCTCTTCAAGTATGTACTGAAGAGGCACAAGGTGCTTGGTCCAGCTCATAATATGTACCGATGCTGTCTACGTATGCAGCGGTGTACTGGTGGTGGACTCCTACCTAGTGGTAGGATGATTTTCTTGAGTCTCTGGAAGGCTGCTACTGAAGTTGGTCTTGGAGTCAGGTGATCCTGCCAGCACCCTATTGGACAGCACCCTAAATTTCAGCATGGAAATATATCACAACCTTCTCAGGTGTTCAGTGAGCTAATCCACCTGGGACATCTTAcctgtgcatgtttttgggtgCAATATGCACTTCAGTATTTGGTTGAAATGCTTCCCTAACCTATCCATCAAAGATTGTTGTGAATCTGAGGTACTGGAAGGTTTTTCTGACCATTACAGGCCTTGAATTCCGGGGATCTTCAATATTAACATTCAGCACCTGTGTCCACTAAAGAATAAACTGGGTTTCCATACATTTCAGGCCAGTCTTTGCATTACTTTCCATGCAGCTTGCCATCCATGCTGAATGTCTGGGGTTGATGGGCATTGGCTCATCACTGGGGCTGCATGCAAGGGTGCAGTGTTTTGCCAAGGGTTGTAGTTCCTGAGGGCACTCGACCATTAAGTGGGTTCACATTAGCTTTACAGTGGTGACACTTTTTTCTCAGCTCGTCAGAAAAGACTTAGAGAACTATGTTTGTCATCTAATTGgaaataaattgattttatGTTCCACAACACTGGTGTGACCTTTCACTCATCTACACCCATCTCCGAATGCTAGCGTTAGACtttctgtaattaaatgtaTGGTAAGAAGAGCTGTAGAGAAAAAATATTCTgaactgtatttatattaaagttaaaacatgaataatttGTTTAGTCTATAGTAAGTAAAGTTTTCATTCAAGAGGAGAGAAAACAGTTCCCAAATGGTGGAGCATTTGTAGAAGAGGTGTCATGATGCtctatttgtgttttattttattcttgcCCTGTAGAGATATTTATAAACTGGTTATAGACTAGGAGTGAAGCATTATAGTAAAAGATATGAGCTGATTACaactttctgttttctgtgtaATAGAGAACACTAATATATGACTGTCCAggtatgtgtgtatggatgatgatgatgatgatgatgatgatgatgatagtggtgattaTTGCTATTAGTGTTGTTTCTTCTtcatctattattatttttcccctgTTTTGGAGCACTGGTCCATAATGGCCACCagggggagggagaggagagagcaaCACATTTCTGAGCACTTatgatactgtatgtttttatatgtatgcaaatttgtaaatttgtattCTAGTTTTCTATAGATGACATTATATATGTCCTTTTATAAGTTGTTAATGTTATAAAACTGTTGCATGCCACTTATACGTGTTTAAAGCCATGCTTGTATCTAACTCCTACAATATTCTCATGCACTAACTTCCTGTAGCTCTGCTTTCCTCTGTAGGACCTGAGCACTATCATACTGTAACTCATCACAGTCTTGTTATATTCCACAACTTACTCAGATAAGTCTGGTCTCTCTATACCATCCCTGTAGCCtagatttgtatttattgtatatattctACATCAATATTAGACTAAAAGTATAAACATACACTTACTACTCAGAATATTTAAGCCAACTCTGTTACACATGGTTTCAGTCTGTGCTTTTTCTTACACCATTCTTTCCTCACACCATCTTCTTAAA

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 850-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306588.1 True 6813 mRNA 0.44 12 1853372 1876515

Neighbor

gene id symbol gene type direction distance location
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 1822 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 42039 1809014 ~ 1811333 (+)
bgna LOC108265721,LOC107577956 coding upstream 50699 1789630 ~ 1802673 (+)
si:dkey-6n6.1 LOC108265720 coding upstream 69280 1775656 ~ 1784092 (+)
rhoaa LOC108265463,LOC108411640,LOC103028705,LOC107599000,LOC103466989,LOC105890655,LOC108438067,LOC103154239 coding upstream 88330 1759988 ~ 1765042 (+)
tab3 tab3 coding downstream 412936 2289451 ~ 2304783 (+)
prrg1 prrg1,LOC108265743 coding downstream 460826 2337341 ~ 2347459 (+)
ccdc181 ccdc181 coding downstream 484439 2360954 ~ 2366245 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 492824 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 532810 2409325 ~ 2418955 (+)
G125144 NA non-coding upstream 40087 1811354 ~ 1813285 (+)
G125129 NA non-coding upstream 90047 1762304 ~ 1763325 (+)
G125119 NA non-coding upstream 157111 1686319 ~ 1696261 (+)
G125117 NA non-coding upstream 230367 1621257 ~ 1623005 (+)
G125116 NA non-coding upstream 234502 1617620 ~ 1618870 (+)
G125208 NA non-coding downstream 84089 1960604 ~ 1993404 (+)
G125239 NA non-coding downstream 182802 2059317 ~ 2256786 (+)
G125276 LOC108265808 non-coding downstream 293046 2169561 ~ 2171015 (+)
G125312 NA non-coding downstream 374927 2251442 ~ 2252516 (+)
G125306 nexn non-coding downstream 384836 2261351 ~ 2265524 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 46582 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 506787 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 651446 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 741305 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 1032005 777964 ~ 821367 (+)
LOC113535242 glis1 other downstream 513 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 339587 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 969194 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1459865 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1568500 3445015 ~ 3537289 (+)

Expression


Co-expression Network