ccdc181 (ccdc181)


Basic Information

Item Value
gene id ccdc181
gene name ccdc181
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2360954 ~ 2366245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306596.1
TGTCTCTATGGTGATAGGCAGCTTGGAGAGGATTAAACtcctactgtacacacacacacacacacacacacacacaggaagttgACTGATAAATAGTCTCCTTTAGGAACAGAAGCTTCTTCTCTCCATAACGCAAAAGAAAAGAGAGCAGTGTGTCTTACAGTTTGTTCCTGTTTAAAATCTGACCAATCTGAATCAACGCCTTGGTCTCGATATTTACGATACGTCTGTGCTGATACAAAGCAGTGTGTGTCAGagagagagagagagagagagagatgagcgtGGCTGTGGGCAGTAACACTCAGGAGGAATATGAGGATGACTTTGAGAAAGATCTGGACTGGCTGATCAGTGAGGAGAGCAAGAACGAGGAGCAgGATGAAGACGACATTGAAGCCCAGATAGACCACGAGCTGGAAGATGAGGAACGAGGGAAGGAACATGACGAAGGGCAGAGTAAAAGTGGCACAGATGACGATGGAGATAACGAAAGATGGCCGACGCCCATGGACCCTTTGGAGGATGCGTTAGATATCAGCAGTGATTCTAAATATGAGCACGATAAAGAAGAGGTTGATGAAGAGAAGAAATCCATCCAGCAGAAGATTGAGCAGGCAAACAGGCAGCTGCAGGACCAGGAGGCACCGGACGAGACGCGCCGCCGCCGTCTGCACTTCAAAGACACGCTCGTGGACCTGGTGGTTCCTGCCAGCGACCTGGAGGACAGTCCGGCGGACGTCTCAGGCCACATGCTGAAGCTCAAGATCTCCTCTCAGGAGGAAAGCGACGGAGGAGACGGACgcagagagggagtgagagaaggaCGAGTGCTGGTGGAGAAGGATGGGAAGTTTGATCTAGTGAGTCTGAAAGAGGTGGAGAGTCCCGGACTGCTCCCGCCTCTCCCCGAGATTCAACGAGAACCCGGCAAGAGTCCGTCCTCCTCCCCGAAACTGCTCTCCAGCTCGGGTTCTTCAGCCTCGTCCGAGCCTCGCTATGCACCCAGGCCTCCAGCACGACCCCGGGCGCGTCCCAATTCAGCGAGCAACACGCAAAGGGTGGTGTTTAGACACGGCAGCAAACGTAGGGTTCAGTCGGCCAGCGGGGTTTCATCTCACGCCACCTTCTTCCTCTCGCCGCAGCAGAAAGAGCTGCTGAACAAACaacaggagaagagagagaaactcGCCAGAGAGgaGGAAGAGCGGAGGcgtgaggaggaggagcagaagcGCCAGGAGAACGAGCTGGCGTTCAGGTCGTGGCTGATGAAGAAGAGGCAGCAGCtgcaggaggagaggagagtgcTGAGAGCTcaggagatggagaggatgaGCGGAAAGAGGGAGTGCTGTGACGCCGAGGAGGCGTTTAAACTCTGGCTgcagaagaagcagcagcagcagctgaaggAGCGACAGCTGGAGGAGATGAAGAGGCTCGAGATGGAGAGCAGCAGCTACCTGCACCGACCTGAGGAGTGTGAGAAAGCCTTCAGACTgTGGTTGAGGAGGAAGCGGATGGAGAAGCGGCTGGAGCAACAGGCTGCTCGAGAGCGCTCCCGCAGGCTGCTGATGGAAGCTGCTGATGGAAGAGCGAGATCCAGTCCCTCCGCTTCAAACAGCCCTACAGCTACCGCTTCTAAACTCCTCCCAATTCTATAA

Function

symbol description
ccdc181 Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Orthologous to human CCDC181 (coiled-coil domain containing 181).

NR:

description
coiled-coil domain-containing protein 181 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306596.1 True 1667 mRNA 0.55 7 2360954 2366245

Neighbor

gene id symbol gene type direction distance location
prrg1 prrg1,LOC108265743 coding upstream 13495 2337341 ~ 2347459 (+)
tab3 tab3 coding upstream 56171 2289451 ~ 2304783 (+)
LOC113535241 LOC108265201 coding upstream 484439 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 509404 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 549621 1809014 ~ 1811333 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 3094 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 43080 2409325 ~ 2418955 (+)
LOC117597819 NA coding downstream 274466 2640711 ~ 2642606 (+)
ptgesl ptges2,LOC103370734,LOC104955211 coding downstream 328718 2694963 ~ 2704063 (+)
npl npl coding downstream 531054 2897299 ~ 2906546 (+)
G125362 cpox non-coding upstream 2133 2357213 ~ 2358821 (+)
G125334 NA non-coding upstream 9953 2349215 ~ 2351001 (+)
G125308 NA non-coding upstream 47013 2280212 ~ 2313941 (+)
G125344 NA non-coding upstream 57462 2302948 ~ 2303492 (+)
LOC117597827 NA non-coding upstream 74538 2284449 ~ 2286416 (+)
G125332 NA non-coding downstream 55313 2421558 ~ 2426331 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding downstream 65481 2431726 ~ 2432649 (+)
G125497 NA non-coding downstream 283444 2649689 ~ 2651252 (+)
G125483 NA non-coding downstream 306698 2672943 ~ 2675991 (+)
G125484 rgl1,LOC107717560 non-coding downstream 339596 2705841 ~ 2745563 (+)
alkal1 LOC108265007 other upstream 128814 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 373382 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 554164 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 1014369 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1159028 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 479464 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 970135 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1078770 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1318648 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1384259 3750504 ~ 3777490 (+)

Expression


Co-expression Network