hnf1a (hnf1a,LOC108412048)



Basic Information


Item Value
gene id hnf1a
gene name hnf1a,LOC108412048
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29932966 ~ 29946606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_034306693.1
CCTTACAGTGCAGCACGCTGGAGCTGAACACACCGCTGCCGTGCGAGAGCCACGGCGTACGGCTGCTTCACACACCCTTCATCACGCTCTCGGTCACAGTTAGACTCTGCACTCTGGCCCGAACTCAGAATGGAGGGAGACGGGGGCAAAGTTCAGcctgacacagagagagacagagagagagtgagagagagagggaggagggggaGAGCAAAGCGAGAAAAATCACCTTCGAAAGCAAAACAACAGCCGGCAGAAGTGGAGACACGAGAGAAGACTAGGAAAAGTGGACGCAAGTCCttactggaagatttaaaaCGGATAAACAGAGCCTACGGAGACACACAGctgggtAATGGAGGGAGGAGATGAGCGAGGGATGGAAGGACGAGTGTGCAGGCTTTCGGCTCTGCAGCAACAACTGCTCTGCTCTCTGCTGGGCTCCGGTGTGACCCGTGAAGTGCTGATCCAGGCCATCAGCGAGCTGGAAAGGGAACGGAACCGAGCCGGAACCGGGGTGGGAGGTGGCGCCGGAGCAGACCGCATGGAAGCAGCGGAGCGGACGGACGGAGAGAGCTCCGAGGACGGAGACTCGGACTTCCCTCCACCCATCTTCAGGGAGATCGAGAAACTACCACCAGAGGAAGCAGCTAGGCAAAGGGCTGAGGTGGAGCAGCTGCTGCAagaggaCCCATGGCGTGTGGCGAAGATGATAAAGAGCTACATGCAGCAGCACAATCTTCCTCAGAGGGAGGTGGTGGAGGCGACGGGACTGAATCAGTCTCACCTGTCACAGCACCTGAACAAAGGTACGCCCATGAAGAACCAGAAACGGGCCGCGCTCTACAGCTGGTACGTCAAGAAGCAGGACGAGATCAGCCAGCAGTTCACCAATGCGAGTCGGGGAATGGTTCTGGGGGAGGAGTCAAGTGAAGAGAACAGGAAGGGGCGGAGAAACCGGTTTAAATGGGGCCCGGCGTCGCAGCAGATCCTGTTCCAGGCCTACGAGCGTCAGAAAAACCCGAgcaaggaggagagagagggactgGTGGAGGAGTGTAACCGagcgGAGTGTTTGCAGAGGGGCGTGTCTCCCTCACAGCTGGCCGGTTTGGGTTCGAACCTCGTGACAGAAGTTCGCGTTTATAACTGGTTCGCTAATCGCCGTAAAGAGGAAGCGTTTCGCCACAAACTAGCGCTCGACCCACCTTacagcagccaatcagcatCCGGGACAGAGCAGAGCATCCCGCCCACTCCCAcacaaggtCTGAAGTTCACTTCCTCTGTAGTGTGCGAGGGCGTAGGGGCAGTGCGGGCAGTGGGGAATGGAGACAGAGCCGATGGAGGACACCTGGGGACGAGTCTCATCCAGCTGGAGCCGAGTCACACGCTTCTGGAAGCACATCAGCACAAACCGgTATCAGGAGGAGGGTCTCTGCCGCCCGTTAGCACCCTGACCTCTCTCCACGgcgtgtctcacacacactccggcTCGCCGCAGGGCCTCATCATGGCCTCCTTACCCAGTGTCATGAGTCTGGGAGACTCGTCTCTGCTcatagGTCTCACGTCCACTCAGCCACAGACAGTTCCTGTCATCAACAACGTAGGGGGCGGGTTCACAACGCTCCAGCCAATCACCTTCCAGCAGCAGCTCCACGCATCCCCCCAGCAGCCAATCACGCAGCAGCTGCCAAGTCACATGACTCCGAGTCCGTTCATGGCCACGATGGCGCCGCTGCCCTGCCACAtgtacaGTAAGACAGATCTGACGTCGTATCCCTCCTCCAGCCTCCTGTCCCAGGCGATGGTCATCGCCGACAGCAGCAGCATCGGAACCCTCGCTAATCTCACCACCGTCCGACAGacgcTGAGCTCAGACCCTGaggaacacacaaacaccccgATCCAGGAGGAGTCACTACACCTGCAGTCCAGCTCTCCAGCaccagTGTCCTCCAGCAGTCTGGAGCTTTATCCCCAAACCCAGTCCAGCGAGACCCACACCTCCCACCTGCTCACCTCATCACCCGGAGACATTGGCCCCTACATCCCCGCACAGATGGTCTCTACCGCTcaatagcagcagcagcagcagcagcagcggacTCACTGGAACGTACCATCAGCGCCTCGTAAATGGGGGgaactatttttttatatttacggCGATTACAGAAGTAAAAACCTTACTGACGTGGCTGAGCGTTAACCGAAGCTGCCTTCGTGTGTCTCTGAGGAATCTctgtggatgatgatgaagatgaagatggaaAGTGCTTTCACTGATgagaacacaaaataataaacatacgTACGTGGATCAGAACAATCCTGATTTTACACACGTCCTGATTTTGTCGAGGCGTCGCCGGAGcagtgtgggcggagcttatgTTAAAattgatcagccaatcacaaactGGATCATCATCGCTATCGTTTGTTTTCATCTCACAAGCTGCTTAGCTTAAAATATCGGTTCTGATTCCACAATATATAACGTTAGTCAGCTAATTAGCTCTCTGACGTTAagtagctagccagctaacacaTAAATAGTGCGATGATGTCATCGAGTTAGCGAGTGATTGTGTAAATCAGCAGCCCTTGACTTGAACCCTTTCATATCCAACGGTAATTATTGttaaacacttttaattttctctgtaaatattattttgatgtataaaatgaattaaaattgtaTAAGAAAAAGAAACGCTTTTTGTTAGCCGTGTTTTTGAGGCTTTTCCGCACCTCAACACCAGCTCACTGCTAGCGAGCTAACTGAGCTAACCCGAGGCTCTACGTCATGTGATGttagaaagagaagaagaagcgagagaaaatgttgaaataaagtttcaaaaaaagagtgagggagaaaagcatgaagaaaaatgaaagtaagGAAGCAGAAGATTTACAGAATAAGAAAGAGATagataaaaaaggaaagaaagaggaagtaaTGTAAAGAGCGACAGATGaagagctgctgattggtcggctCTGAGGTGCCGTGTGACATCATCAGGGGCAGTTGGAATTCAAA

Function


symbol description
hnf1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and protein dimerization activity. Acts upstream of or within type B pancreatic cell development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in glucose metabolism disease (multiple); liver disease (multiple); and renal cell carcinoma. Orthologous to human HNF1A (HNF1 homeobox A).

NR:

description
hepatocyte nuclear factor 1-alpha

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K08036 TCF1, HNF1A; transcription factor 1, hepatocyte nuclear factor 1-alpha

RNA


RNA id representative length rna type GC content exon number start site end site
XM_034306693.1 True 3061 mRNA 0.53 12 29932966 29946606

Neighbor


gene id symbol gene type direction distance location
LOC113546086 NA coding upstream 5 29930249 ~ 29932961 (+)
LOC117597833 hps4 coding upstream 22014 29909977 ~ 29910952 (+)
LOC113546087 LOC108264941,LOC108412053 coding upstream 29723 29899457 ~ 29903243 (+)
prkab1b aakb1 coding upstream 45611 29878359 ~ 29887355 (+)
msi1b msi1,LOC107687968,LOC107712472 coding upstream 88496 29820503 ~ 29844470 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding downstream 164191 30110797 ~ 30131740 (+)
LOC113546114 NA coding downstream 187330 30133936 ~ 30160538 (+)
rnf34a LOC108264913 coding downstream 230876 30177482 ~ 30181554 (+)
orai1a orai1,LOC108414442,LOC106585507 coding downstream 259902 30206508 ~ 30213445 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 369222 30315828 ~ 30322195 (+)
G140943 NA non-coding upstream 428094 29503683 ~ 29504872 (+)
G140935 NA non-coding upstream 511672 29420880 ~ 29421294 (+)
G140910 NA non-coding upstream 635169 29297050 ~ 29297797 (+)
G140884 NA non-coding upstream 686650 29239482 ~ 29246316 (+)
G140830 NA non-coding upstream 766760 29158731 ~ 29166206 (+)
G141235 NA non-coding downstream 3252 29949858 ~ 29968041 (+)
G141236 asphd2 non-coding downstream 18161 29964767 ~ 30022919 (+)
G141324 NA non-coding downstream 96236 30042842 ~ 30043393 (+)
G141328 NA non-coding downstream 97320 30043926 ~ 30098842 (+)
G141348 NA non-coding downstream 217787 30164393 ~ 30164991 (+)
G141234 hps4 other upstream 3812 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 3896 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 56686 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 581204 29325934 ~ 29351762 (+)
slc7a4 slc7a4 other upstream 1129792 28748834 ~ 28803174 (+)
ggt5a LOC108264907 other downstream 82255 30028861 ~ 30040856 (+)

Expression



Co-expression Network