LOC113533433 (st1s3,LOC108432118,LOC108265623)


Basic Information

Item Value
gene id LOC113533433
gene name st1s3,LOC108432118,LOC108265623
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22163978 ~ 22170747 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306843.1
CAAATATACCAGTATTATCCACATTACAAtgaattatttgattattttttgactattaactgaattttttaaattgccaAGAGTCACAGCTTTAGTGTCCTTCTCTAGGGTAATAAAGTTCATTGGAGAGGTTGGGCATTAACAGAATGCAAACTTTATGTGTCATGTTTGGACAAATCTGTGGTAGGAGTGAGAGTGAGATCTGTGGTGATAAGTAAAAGAGTAGTGTGAGAAAAGCAGTACCACTTATTTCATAATGGAAGGACTTAATCTTTCTTCGATCAACCAGTCAACCAGTCGACCAGAACTGATTGATTTTGAAGGCATTTCTATGGTCCGTTACTTCACTGATGAATGGGAAAAGGTTCAGAAATTTCAAGCGAGACCAGATGATATCCTCATTGCTACTTACCCCAAAGCAGGCACCACTTGGGTCTCCTACATTTTGGAGCTACTCTATTTTCACAATACATTGCCAGAGAGTCAGACCTCACTGCCCATCTTCATAAGAGTGCCTTTCCTTGAGGCAGTCTTTCCTGAGATGCCTACAGGGGTTGAACTGGCAGATAAATTGCCCACCACACCACGGCTCATCAAAACTCATCTACCTGTTCAGTTGGTGCCCAAGTCCTTCTGGGAACAGAACTGCAAGGTTATTTATGTAGCTCGCAATGCCAAAGACAATGCGGTGTCTTATTTCCACTTTTCTCGCATGGTCAACTTACTACCTGAGCCAGGAAACTGGAATACTTTCTTACAGAATTTCATGGATGAAAAGATGGTGTTTGGACCTTGGTATGATCATGTGTCTGGCTACTGGGAGAAGAAGCAGACATACTCTAATCTTCACTACATGTTCTTTGAAGACATGGTAGAGaacactgggcgtgaggtggaGCAATTGTGCTCCTTCCTTGGTTTATCTACACCAgcagaagagaaggaaagaattACAAAAGGCGTTCACTTTGATGCTATGAAGCAGAATGACATGACCAACTATTCTACATTCTCACACATGGACTTCAAGATCTCACCATTCATGCGCAAAGGGAAAGTTGGAGACTGGAAGAATCACTTCACTGTGGCTCAAAATGAGCAGTTTGATGAACACTACTGGCGGAAGATGAAGAACACAACCTTACAGTTCCACACAGAGATTTAGGACAGCAAtataatttacagtatattacacaGCAGTTTAGTCAAGATTATTTTGTCTGCATGTGCTGTACATAATCAGTAAAAGGCATACTGAAAGgaataatgtgatttttttccccaagataTCAATTCAAATAAAACTATTTGAGAATTGTTCATTACATCTGATTGAAGCAACTCTGTTCTTAGAACCTCTCAGATATTAAATATGTACAGATCAGTAACAGATCAGCAATGTATTCAATCCTAGAATATGACTAAACTGcccttatttatataaaatgtttagtgcTCTAGAAAAAAAGTGGAATGTCACAAGCATGCTCAAACAATAATCAAATTCCTTACTCAATTGTTcttgtcatgttcatgttttaaaagaaaaacaatgctTGATGAGTAAGCTGTTATGCTGTTATGTTATATGAATCTAGATCCAACCTGTATGAGCATTTGTGCCTGAGATCCTGTGATGGTGATACACTTTTCTTAGTGTTTCGTTATACATGTTGCTGGTGCCCAGATGTCTTACTCTGTGATCATTTGGTGATAAAGTCATGGGTAGGCGCAAACGAATACACTGTTCAGACTTACACTCTCAAGAGAAGTCTCCTTTCTTGGGCTTTCCTGTATGTGTGACCAGAATGGAGTGAAATAAAGCAGAACTTAAGGGA

Function

NR:

description
PREDICTED: cytosolic sulfotransferase 3 isoform X1

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306843.1 True 1838 mRNA 0.39 8 22163978 22170747

Neighbor

gene id symbol gene type direction distance location
b3galt4 b3galt4 coding upstream 15645 22145089 ~ 22148333 (+)
trh trh coding upstream 60622 22100466 ~ 22103356 (+)
LOC113533243 rho,LOC107698434,LOC107747750,LOC107758318 coding upstream 255426 21903886 ~ 21908552 (+)
ift122 ift122 coding upstream 260740 21860308 ~ 21903238 (+)
wu:fl23c11 LOC108265627 coding upstream 339134 21808021 ~ 21824844 (+)
LOC113533311 LOC108265623,LOC108432095,LOC108432121,LOC108265625,LOC108265470,LOC108432118 coding downstream 3382 22174129 ~ 22181491 (+)
LOC113533223 LOC108265625,LOC108265470,LOC108265623,LOC108432118,LOC107687125 coding downstream 17073 22187820 ~ 22194724 (+)
LOC113533222 LOC108265470,LOC108265625,LOC108265623,LOC108432118,LOC108432095 coding downstream 26002 22196749 ~ 22205160 (+)
LOC113533224 LOC108265469,LOC108432124 coding downstream 35130 22205877 ~ 22212021 (+)
qars1 qars coding downstream 81526 22252273 ~ 22266629 (+)
G137017 NA non-coding upstream 14201 22148623 ~ 22149777 (+)
G136544 NA non-coding upstream 324126 21839632 ~ 21839852 (+)
G136532 NA non-coding upstream 338656 21824989 ~ 21825322 (+)
G136466 NA non-coding upstream 470276 21674858 ~ 21693702 (+)
G136433 NA non-coding upstream 802098 21360839 ~ 21361880 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 133982 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 296020 22466767 ~ 22467029 (+)
G137087 NA non-coding downstream 297887 22468634 ~ 22468839 (+)
G137088 NA non-coding downstream 300294 22471041 ~ 22471330 (+)
G137229 NA non-coding downstream 340158 22510905 ~ 22511176 (+)
LOC113533283 rbsn other upstream 40227 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 304310 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 366170 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1416122 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1721787 20222415 ~ 20442191 (+)
LOC113533405 NA other downstream 336879 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 423787 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 1077601 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1343839 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 1579670 23750417 ~ 23757114 (+)

Expression


Co-expression Network