LOC113523739 (LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546)


Basic Information

Item Value
gene id LOC113523739
gene name LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30315828 ~ 30322195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306849.1
atcacactgcacgtcctgaagaacatgaaccacacggatctcgctaacacactgcacaacaagtctgtggcctctgtgtatcagcAAGAGCTCAAATccaacctgagagagaagtttaacagaattaatgaaggaatctctcagcatggaagctcagttcttctgaatgagatctacacagagctctacatcacagagggttggagtggagacgtcaataatgaacatgaggtgagacagattgagacagcgtccaggagaccagcaacacaggagacacccatcaaatgtaatgacctctttaaagacaagtctataagaagtgtgctgactaaaggagttgctggaattggaaaaacagtctccgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggacatcTTCTTcgtgtttccacttccctttagagagctgaatttgatgaagcagaaaaaacTCACTCTGATGagtcttcttcatcactttttcccagaaatgagaaaactagaATTAATAGACTGTGAGTCctacaaagtggtgttgatctttgatggtctggatgagtgtcgacttcctctaaatttccagaacaatgagagattgtgtgatgtgacagagtcagcctcagtggatgttctgctgacaaacctcatcaaggggaacctgcttccctctgctctcctctggataacctctcgaccaggagcagccaatcagatccctcctgagtgtgtagaccaggtaacagaggtacgaggcttcagtgatcctcagaaagaggagtatttcaggaagaggatcagtgatcagagcctggccaataaaatcatcagacACATGGAGTCTTCacgaagcctctacatcatgtgccacatcccagtcttctgctggatctcagccactgttctagagagaatgttgggtgaagcagagagtggagagatccccaagactctgactcaaatgttcacacacttcctgatctttcagatcaaacacaaggaccaaaagtaccatcagaaatgtgaccgtgatcctcagcagaccagagagagtatcctggcactgggaaaactggctttccaacagctggagaaaggaaacctgatcttctatgaggaagacctgagagagtgtggcattgatgtcacaGAAGcttcagtgtactcaggagtgtgtacccaaatcttcagagaggagtttgggcttcacctggggaaggtgttcagctttgtacacctgagtgttcaggagtttctggctgctttatacgcatttctctcatttatctttaaaaagagaaatgtttttgtGGAGCAAAACACTAGCATTTTTCATGTCTTCAGAAAGTCCAACATgtgtgatttcctcaggagtgcagtggacaaggccttacagagtgagaatggacacctggacctgttcctccgcttccttctgggtctctcactggagtccaatcagactctcttacgaggcttaatgccacagacaggaagcagctctcacagcaaacaggaaacagtcgagtacatcaAGAAGAAGATCAGgaagaatccatctccagagaaatccatcagtctgttccactgtctgaatgaactgaatgatcattctctagtgcaggaagtacaaacttaCCTGAATAAAACCTGGTGCCCCCGTCTCAGTGGATtcagactctctcctgctcagtggtcagctctggtgtttatgttactgaactcagaacagcaGCTGGAGGAGTTTAAATTGAGGAAATATGACCAATCAGAGGAATGTTTTGTGaagctgctgccagtggtcaaagcctccagaaaagctgttgtGACTGGGTTTAAACTctcagaggaaagctgtagagctctgtcctcagtacttagctcaaactcctccaatctgagagaactggacctgtgTAACAGTTCCCTCTgcgattcaggagtgaagctgctctctgctggactggagaatccacactgtacactggagaaactggGGTTGCGTGCGTGtgatctgacagaggaaagctgtagagctctgtcctcagttctcacctcaaactcctccagtctgagagaactgaacctgagtgtCAATACACtgctgcaggattcaggagtgaagctgctctctgctgcactgaagaatccacactgtaaactggagaaactggaGATGTCTCACTGCAGAattacagatgaaggttgtgctgctttggcttcagctctgaggtcaaactcctcatcacacctgagagaactgaacctggAATACAATGAagcaggagaatcaggagtgaagctgctctctgatctactg

Function

NR:

description
PREDICTED: NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306849.1 True 2337 mRNA 0.46 5 30315828 30322195

Neighbor

gene id symbol gene type direction distance location
orai1a orai1,LOC108414442,LOC106585507 coding upstream 102383 30206508 ~ 30213445 (+)
rnf34a LOC108264913 coding upstream 134274 30177482 ~ 30181554 (+)
LOC113546114 NA coding upstream 155290 30133936 ~ 30160538 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding upstream 184088 30110797 ~ 30131740 (+)
hnf1a hnf1a,LOC108412048 coding upstream 369222 29932966 ~ 29946606 (+)
selenop LOC108264920,LOC108264932 coding downstream 55418 30377613 ~ 30382370 (+)
G141454 NA non-coding upstream 32489 30283140 ~ 30283339 (+)
G141377 NA non-coding upstream 94881 30220721 ~ 30220947 (+)
G141349 NA non-coding upstream 100098 30214918 ~ 30215730 (+)
G141350 NA non-coding upstream 101007 30214486 ~ 30214821 (+)
G141375 NA non-coding upstream 101452 30213785 ~ 30214376 (+)
G141462 NA non-coding downstream 11583 30333778 ~ 30374533 (+)
ggt5a LOC108264907 other upstream 274972 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 386674 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 386758 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 439548 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 964066 29325934 ~ 29351762 (+)

Expression


Co-expression Network