LOC113546086


Basic Information

Item Value
gene id LOC113546086
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 29930249 ~ 29932961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306907.1
ATGATTCTGAAGGGACCGCTCTCGCCTCGGGGCCCTCAGACCCACGGGCCCGCTCGACCTGCTATTGATTGTGCTCAGGgtcagaaaaagaaaGAGTCGGGCGCTACTGGGAAGCGGGGACAGTGCGGGCAGCTCACCGCGCCGTGGACCGACACCGAGGTCACCTCACTGTCCGGAGACTGGGGCCTCATGTACCGCCTGAAAGTGTTACCCATGTCTAAGGATGGACCGCATCGCCTGGTTTTCCCGGAGCAGCCGCTGTTCCGCTTCATTAGGCGGGTGTACAGGTGCTGTCAGATGGGCCACCACTGCCGAGGAGTTAAAGGCCTCCAGGGCCGGGAGACTGCAGGCTCCACGGTCGAGTTTGTGCTGAGCGAGGACGTGTGGTCAGCGCCGATACTGAGAGCCGAGGTTCATCTTCACATCTCCAGCCCACAGCCGCTGAACGTCCAGCCGCTGCTGCCCTGGCTCGAGAAACGCCACCTTCCTACGAGATACAGTGTGTGGTGGAAGGACGGCATGCTGGAGGTCAGGGTGGATCTGCTCTTCCTCTTCCAGGCTCTTCAGGCTCTCCGAGCGAAGCGTGGAGGCTCCAGCGTGATGGAGATCCGGCGTGTCGGAGGTCTGCACGCACTCCGGCTTCGGAAGCGAGACCCACTGAGGCGCAGGGTGGAGACGGGAGGGCGGAGCGCCCCCTGCAGGTTCCTGTAGAGCTGGGC

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04919 Thyroid hormone signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306907.1 True 719 mRNA 0.63 4 29930249 29932961

Neighbor

gene id symbol gene type direction distance location
LOC117597833 hps4 coding upstream 19297 29909977 ~ 29910952 (+)
LOC113546087 LOC108264941,LOC108412053 coding upstream 27006 29899457 ~ 29903243 (+)
prkab1b aakb1 coding upstream 42894 29878359 ~ 29887355 (+)
msi1b msi1,LOC107687968,LOC107712472 coding upstream 85779 29820503 ~ 29844470 (+)
lzts1 LOC108264908 coding upstream 130305 29788461 ~ 29799944 (+)
hnf1a hnf1a,LOC108412048 coding downstream 5 29932966 ~ 29946606 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding downstream 177836 30110797 ~ 30131740 (+)
LOC113546114 NA coding downstream 200975 30133936 ~ 30160538 (+)
rnf34a LOC108264913 coding downstream 244521 30177482 ~ 30181554 (+)
orai1a orai1,LOC108414442,LOC106585507 coding downstream 273547 30206508 ~ 30213445 (+)
G140943 NA non-coding upstream 425377 29503683 ~ 29504872 (+)
G140935 NA non-coding upstream 508955 29420880 ~ 29421294 (+)
G140910 NA non-coding upstream 632452 29297050 ~ 29297797 (+)
G140884 NA non-coding upstream 683933 29239482 ~ 29246316 (+)
G140830 NA non-coding upstream 764043 29158731 ~ 29166206 (+)
G141247 NA non-coding downstream 4547 29937508 ~ 29954068 (+)
G141235 NA non-coding downstream 16897 29949858 ~ 29968041 (+)
G141236 asphd2 non-coding downstream 31806 29964767 ~ 30022919 (+)
G141324 NA non-coding downstream 109881 30042842 ~ 30043393 (+)
G141328 NA non-coding downstream 110965 30043926 ~ 30098842 (+)
G141234 hps4 other upstream 1095 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 1179 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 53969 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 578487 29325934 ~ 29351762 (+)
slc7a4 slc7a4 other upstream 1127075 28748834 ~ 28803174 (+)
ggt5a LOC108264907 other downstream 95900 30028861 ~ 30040856 (+)

Expression


Co-expression Network