rnf34a (LOC108264913)


Basic Information

Item Value
gene id rnf34a
gene name LOC108264913
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 30177482 ~ 30181554 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306942.1
gtgtgggcatcgTGTTGTGGTCTGCTGAACGAGGTGATGGGGGCGGGAGCAGTGAGAGGACAGCAGTCCGGGTTCGGAGGAGCCGGTCCGTTCCGCTTCGCTCCGTCTGCCGgatattccacacacacacaccctcacacaccctcacacacagactcgtactcacacacactcacacactcatcctcacacacactctcacacacagactcgtacacaccctcacacacacactcatcctcacacacactctcaaagacacactcacacacacacccccctcactcacacacactcagctgtcAATCATGTAGGGAGAGCTTCTCCATCTTCAGGAGGAGGtatgtgtgttgtgagtgtaggCGGAGTTTCTGCTCAGTGTGTTCGGTTCTGCAGGAGAACCTGAGGATCTGCTGCACGTGTAACCTGCTGAAGGCGACGGCGTTCCAGCGGCCGCGCCTCATGAAGCTGCGCGTTAAAGACCTGCGACGCTACTTAACACTACGCAACATCAACACCGACACCTGCAGagaaaaagaggacTTGGTCAATTTAGTGCTGTTTCACCAAGGGGTGGAGAGCGAGGATGATTCGGACACGCCCACTTTACCCACAAGCCCACTGTACACCCCACCCACTACAGACTCCGCCTCCGTGCTCTCATCTGCTCACGAAGAGCCAATCAGCAGGGACGATGGCACAGGATCCACCAATGAGcagcTTGTCGACTCTGCGTCACTTTTCACCCTCGAGCCTACAGAACAAACCCCAGAggtggtGCGGAGGGCGGGGCGAGCGTCTCTCTCCGACCTGTCGTGTGTGGATGACGTGGAGCAGCTCACGGTGCGACAGCTGAAGGAAATCCTGGCCCGGAATTTCGTCAACTTTTCCGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGAGTGAGGAGACTGTACACAGAGAACGAGGACAACCGCAAGTCcaTGGAGAACGTGAGCCACGCTGTCAGCACAgTCGAAGCTTTTCCTCCTGATGCAGTCAGAGacggCGGGAGCGCTCGGCTGGCGGCTGATGAGAATCTGTGTCGTATCTGCATGGACGCGGTGATCGACTGCGTGCTGTTGGAGTGCGGTCACATGGTCACGTGTACGAAGTGCGGAAAGCGCATGAGCGAGTGTCCGATCTGCAGACAGTTCGTCATCCGCGCCGTCCACGTCTTCAGGTcctgacgtcacacacacacgcacgatATGCGAACATTCCACGGGAGACGCCGATGCAGcatctattcacacacacacacacacacacaccttggctGCGGAGTCAGATCGGCTCCTCCTTCACTCAGGATATATAACGTTCCAAATGCTCTTCTTCTCATTcgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggcaatGTACTTGTGAGCATTAATATCATGTTAACGTAATCAGATGTAAGGGGAAGTCGACAAGCCTCATGTTCACCTGGAGCACCAGAGcaatacctgtgtgtgtgtgtgtgtgtgtgtgtgtgagattattgTGGTAAGGGTAATGTGCTCTACTTTGTGTTAATTCttcattactctgtgtgtgtgtgtgtgtgtgtgtttcactcaaatatgtttattttcttgtaacaaaaaaatgaaagttttctTTAATCCATAATGAACTAATAAACTACGTGCAACTTCTTACTGCCTTGTGCTAAAAGAATTAaacgaa
>XM_034306943.1
gtgtgggcatcgTGTTGTGGTCTGCTGAACGAGGTGATGGGGGCGGGAGCAGTGAGAGGACAGCAGTCCGGGTTCGGAGGAGCCGGTCCGTTCCGCTTCGCTCCGTCTGCCGgatattccacacacacacaccctcacacaccctcacacacagactcgtactcacacacactcacacactcatcctcacacacactctcacacacagactcgtacacaccctcacacacacactcatcctcacacacactctcaaagacacactcacacacacacccccctcactcacacacactcagctgtcAATCATGTAGGGAGAGCTTCTCCATCTTCAGGAGGAGGtatgtgtgttgtgagtgtaggCGGAGTTTCTGCTCAGTGTGTTCGGTTCTGCAGGAGAACCTGAGGATCTGCTGCACGTGTAACCTGCTGAAGGCGACGGCGTTCCAGCGGCCGCGCCTCATGAAGCTGCGCGTTAAAGACCTGCGACGCTACTTAACACTACGCAACATCAACACCGACACCTGCAGagaaaaagaggacTTGGTCAATTTAGTGCTGTTTCACCAAGGGGTGGAGAGCGAGGATGATTCGGACACGCCCACTTTACCCACAAGCCCACTGTACACCCCACCCACTACAGACTCCGCCTCCGTGCTCTCATCTGCTCACGAAGAGCCAATCAGCAGGGACGATGGCACAGGATCCACCAATGAGcTTGTCGACTCTGCGTCACTTTTCACCCTCGAGCCTACAGAACAAACCCCAGAggtggtGCGGAGGGCGGGGCGAGCGTCTCTCTCCGACCTGTCGTGTGTGGATGACGTGGAGCAGCTCACGGTGCGACAGCTGAAGGAAATCCTGGCCCGGAATTTCGTCAACTTTTCCGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGAGTGAGGAGACTGTACACAGAGAACGAGGACAACCGCAAGTCcaTGGAGAACGTGAGCCACGCTGTCAGCACAgTCGAAGCTTTTCCTCCTGATGCAGTCAGAGacggCGGGAGCGCTCGGCTGGCGGCTGATGAGAATCTGTGTCGTATCTGCATGGACGCGGTGATCGACTGCGTGCTGTTGGAGTGCGGTCACATGGTCACGTGTACGAAGTGCGGAAAGCGCATGAGCGAGTGTCCGATCTGCAGACAGTTCGTCATCCGCGCCGTCCACGTCTTCAGGTcctgacgtcacacacacacgcacgatATGCGAACATTCCACGGGAGACGCCGATGCAGcatctattcacacacacacacacacacacaccttggctGCGGAGTCAGATCGGCTCCTCCTTCACTCAGGATATATAACGTTCCAAATGCTCTTCTTCTCATTcgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggcaatGTACTTGTGAGCATTAATATCATGTTAACGTAATCAGATGTAAGGGGAAGTCGACAAGCCTCATGTTCACCTGGAGCACCAGAGcaatacctgtgtgtgtgtgtgtgtgtgtgtgtgtgagattattgTGGTAAGGGTAATGTGCTCTACTTTGTGTTAATTCttcattactctgtgtgtgtgtgtgtgtgtgtgtttcactcaaatatgtttattttcttgtaacaaaaaaatgaaagttttctTTAATCCATAATGAACTAATAAACTACGTGCAACTTCTTACTGCCTTGTGCTAAAAGAATTAaacgaa
>XM_034306944.1
gtgtgggcatcgTGTTGTGGTCTGCTGAACGAGGTGATGGGGGCGGGAGCAGTGAGAGGACAGCAGTCCGGGTTCGGAGGAGCCGGTCCGTTCCGCTTCGCTCCGTCTGCCGgatattccacacacacacaccctcacacaccctcacacacagactcgtactcacacacactcacacactcatcctcacacacactctcacacacagactcgtacacaccctcacacacacactcatcctcacacacactctcaaagacacactcacacacacacccccctcactcacacacactcagctgtcAATCATGTAGGGAGAGCTTCTCCATCTTCAGGAGGAGGtatgtgtgttgtgagtgtaggCGGAGTTTCTGCTCAGTGTGTTCGGTTCTGCAGGAGAACCTGAGGATCTGCTGCACGTGTAACCTGCTGAAGGCGACGGCGTTCCAGCGGCCGCGCCTCATGAAGCTGCGCGTTAAAGACCTGCGACGCTACTTAACACTACGCAACATCAACACCGACACCTGCAGagaaaaagaggacTTGGTCAATTTAGTGCTGTTTCACCAAGGGGTGGAGAGCGAGGATGATTCGGACACGCCCACTTTACCCACAAGCCCACTGTACACCCCACCCACTACAGACTCCGCCTCCGTGCTCTCATCTGCTCACGAAGAGCCAATCAGCAGGGACGATGGCACAGGATCCACCAATGAGcagcTTGTCGACTCTGCGTCACTTTTCACCCTCGAGCCTACAGAACAAACCCCAGAggtggtGCGGAGGGCGGGGCGAGCGTCTCTCTCCGACCTGTCGTGTGTGGATGACGTGGAGCAGCTCACGGTGCGACAGCTGAAGGAAATCCTGGCCCGGAATTTCGTCAACTTTTCCGGCTGCTGTGAGAAGTGGGAGCTGGTGGAGCGAGTGAGGAGACTGTACACAGAGAACGAGGACAACCGCAAGTCcaTGGAGAACGTGAGCCACGCTGTCAGCACAgacggCGGGAGCGCTCGGCTGGCGGCTGATGAGAATCTGTGTCGTATCTGCATGGACGCGGTGATCGACTGCGTGCTGTTGGAGTGCGGTCACATGGTCACGTGTACGAAGTGCGGAAAGCGCATGAGCGAGTGTCCGATCTGCAGACAGTTCGTCATCCGCGCCGTCCACGTCTTCAGGTcctgacgtcacacacacacgcacgatATGCGAACATTCCACGGGAGACGCCGATGCAGcatctattcacacacacacacacacacacaccttggctGCGGAGTCAGATCGGCTCCTCCTTCACTCAGGATATATAACGTTCCAAATGCTCTTCTTCTCATTcgttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggcaatGTACTTGTGAGCATTAATATCATGTTAACGTAATCAGATGTAAGGGGAAGTCGACAAGCCTCATGTTCACCTGGAGCACCAGAGcaatacctgtgtgtgtgtgtgtgtgtgtgtgtgtgagattattgTGGTAAGGGTAATGTGCTCTACTTTGTGTTAATTCttcattactctgtgtgtgtgtgtgtgtgtgtgtttcactcaaatatgtttattttcttgtaacaaaaaaatgaaagttttctTTAATCCATAATGAACTAATAAACTACGTGCAACTTCTTACTGCCTTGTGCTAAAAGAATTAaacgaa

Function

NR:

description
E3 ubiquitin-protein ligase RNF34-like isoform X4

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K20804 RNF34; E3 ubiquitin-protein ligase RNF34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306942.1 True 1733 mRNA 0.53 8 30177482 30181554
XM_034306943.1 False 1730 mRNA 0.53 8 30177482 30181554
XM_034306944.1 False 1703 mRNA 0.53 7 30177482 30181554

Neighbor

gene id symbol gene type direction distance location
LOC113546114 NA coding upstream 16944 30133936 ~ 30160538 (+)
lrrc75ba lrrc75ba,LOC108264915,LOC108414797,LOC107753104 coding upstream 45742 30110797 ~ 30131740 (+)
hnf1a hnf1a,LOC108412048 coding upstream 230876 29932966 ~ 29946606 (+)
LOC113546086 NA coding upstream 244521 29930249 ~ 29932961 (+)
LOC117597833 hps4 coding upstream 266530 29909977 ~ 29910952 (+)
orai1a orai1,LOC108414442,LOC106585507 coding downstream 24954 30206508 ~ 30213445 (+)
LOC113523739 LOC108263642,LOC108270747,LOC108273691,LOC108270753,LOC108261292,LOC108274210,LOC108257668,LOC108261406,LOC108273546 coding downstream 134274 30315828 ~ 30322195 (+)
selenop LOC108264920,LOC108264932 coding downstream 196059 30377613 ~ 30382370 (+)
G141366 NA non-coding upstream 5479 30171653 ~ 30172003 (+)
G141348 NA non-coding upstream 12491 30164393 ~ 30164991 (+)
G141328 NA non-coding upstream 78640 30043926 ~ 30098842 (+)
G141324 NA non-coding upstream 134089 30042842 ~ 30043393 (+)
G141236 asphd2 non-coding upstream 154563 29964767 ~ 30022919 (+)
G141367 NA non-coding downstream 7913 30189467 ~ 30202765 (+)
G141375 NA non-coding downstream 32231 30213785 ~ 30214376 (+)
G141350 NA non-coding downstream 32932 30214486 ~ 30214821 (+)
G141349 NA non-coding downstream 33364 30214918 ~ 30215730 (+)
G141377 NA non-coding downstream 39167 30220721 ~ 30220947 (+)
ggt5a LOC108264907 other upstream 136626 30028861 ~ 30040856 (+)
G141234 hps4 other upstream 248328 29910029 ~ 29929154 (+)
LOC113546064 hps4 other upstream 248412 29903513 ~ 29929070 (+)
LOC113546008 LOC108264940,LOC108412050 other upstream 301202 29860188 ~ 29876280 (+)
LOC117597881 LOC108265326 other upstream 825720 29325934 ~ 29351762 (+)

Expression


Co-expression Network