qars1 (qars)


Basic Information

Item Value
gene id qars1
gene name qars
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 22252273 ~ 22266629 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306976.1
TCCCTCTCTCATACTAGCATTTTTCTTTGGCGGTGGCGTGCGTGTGTGGAGCAGTGGAACAGTGGAACATGGCGGATTTGGTGGCTCTTTTTACCTCCATCGGGCTCAGTGAGCAGAAAGCTAAGGAGACGCTAAAAAATGAGCAGCTCAGTTCAGCTCTCAGAGACGCTATTACACAGGCCCAGAAGCTGTTGGGATCCAAAGAAGTGGACAAAGCCATAGGGAACCTGCTGTACAGCATGGCGTCTCGTCTCCGAGACCTTCGGCGCTTGACCTACTTGACTGATTATATCGTCAAACGCAAGATCAACACAGAGCTGCAATTGGCGGCTGCATTAGACTTTGTGAAGAGCCATCCTGAGGATCCTCTGGACAAGAAGGCATTTGAGACTGCTTGTGGTGTGGGAGTTGTTGTCACATCAGAGCAGATTGAAGATGTGGTTGAGCTAAccatcagaaaacacaaagagcaGCTATTGGCTGAGCGATACCGCTTCAACATGGGGCTCCTCATTGGTGAAGCCAGAGCTGCTCTTAAATGGGCAGATGGGAAAATCCTAAAGAACGAAGTAGACTTGCAGGTCTTGCACCTCCTGGGTCCTAAAACCGAGGAAGACCTGGAGAAAAAACCCAAGGCAGATAAAGCCAAACCagcagagaaggagaagaaggaggagacgGTTGAGTCTGTGAATGATGTTAAGATGGGGAAATCTCTGATGGAGCAGCTGAGAGGAGAAGCTCTCAAGTTCCATAAACCAGGTGAGAATTACAAGACTGAAGGTTACGTTGTAACACCAAACACCATGAAACTGCTGAAACAGCACCTGGAACTCACCGgaggacaggttCGGACTCGGTTCCCTCCTGAACCTAATGGCATCCTTCACATCGGCCACGCCAAGGCTATTAACTTCAACTTTGGTTATGCTAAGGCAAATAATGGCATCTGCTTCCTCCGCTACGATGACACAAACccagagaaagaggaggagaaatatttcactgccattagagatatggtggagtggctggGCTATAAGCCCTATGCCATTACTCATGCCTCTGACAACTGTCAAAGGTCAGCTGTAAACTTAATTGTCAGGGGTCATGCGTATGTGTGCCACCAGCGCAGCGAAGAGCTGAAGGGCCACAATGTGCCGCCCTCACCATGGAGGGATCGGCCAGTGGAGGAGTCCATCGTTCTCTTTGAGAGAATGAAGAAGGGCTTGTTTGCAGAGGGTGATGCCACACTCCGCATGAAGATGATCATGGAGGATGGCAAGATGGACCCAGTGGCTTACCGCATCAAATACACGCCTCACCACAGAACAGGAGACACCTGGTGTATATATCCTACATATGACTACACCCACTGCCTGTGTGACTCAAtcgaacacatcacacactcactgtgcaCCAAAGAGTTTCAGTCTAGgCGCTCGTCATATTTCTGGCTGTGCAATGCTCTGGACCTGTACTGCCCTGTGCAGTGGGAGTATGGCAGACTCAACCTCACCTACACGGTCGTCTCCAAGAGGAAGATCATCAAGCTGGTCGAGACAGGGGCTGTCAGAGACTGGGACGACCCACGCCTCTTCACCCTCACTGCTCTCAGGAGACGTGGCTTTCCCTCTGAGGCCATCAACAACTTCTGCGCCCGTGTGGGCGTGACCGTTGCCCAGACAACCACAGAGCCCCACATGTTGGAGGCATGTGTGAGGGATGTGCTTAATGAAACTGCACCGAGGGCCATGGCTGTCCTGGAACCTCTCAAAGTGACCATCACCAATCTGGCTGCTGATGCACAGACTGAGATTCGTGTTCCAGACTTCCCTGCAGATGAGAATAAGGGTAGCCATGTGGTTCCCTTCTCCAAAACAATCTTCATTGAGCAGAGTGACTTCAGAGAGGTAATGGAGAAGGGCTACAAGCGTCTGACTCCTGAGCAGCCAGTAGGCCTGAGGCATGCCGGCTATGTCATCTCTGTGCAGCGTGTCATCAAGGATGACAGTGGTAAAGTGGTGGAGCTGGAGGTGACGTGCACCAGCTCAAATTCTGCTGAGAAACCCAAAGCCTTCATCCACTGGGTCTGCGAGCCCCTGCAGTGTGAAGTGCGCCTCTATGAGCGACTATTCCTCCATAAAAACCCAGAAGACTCATCTGAAGTGCCTAATGGCTTCCTGAGTGACATCAATCCGAATTCCCTGCAAGTGATTGAAAATGCCTTAATTGACCGCTCATTGAGCAAGGCCAAAGTCTTTGATAAATTCCAGTTCGAGAGAGTGGGTTATTTCTCCCTGGATCCAGATAGCACAGCTGATAAGCTGGTTTTCAACAGGACAGTGACACTCAGGGAGGATCCTGGGAAAATCTGAGAGCTCCCCTGGACCAAAGAGCAATGGTTTTATGTATGCTGGACTACATCACTGTGCAGAAATGGCTTGTAACTTATAGGAAATGTATCAGTAATGTTTAAAAGGTGGAAAGTCAAAAGGTTGTATGCTGGTGCTGGGCAGTGTTGGCGCTTACATATGCAATGTTCTTGTGTCTCATGCTGAACTCCTTTCATATGTCTGGGGAAAGATACAAACTTTTggaataaatcatatttaagtaaaaaaaaaaa

Function

symbol description
qars Predicted to enable several functions, including glutamine-tRNA ligase activity; protein kinase binding activity; and protein kinase inhibitor activity. Predicted to be involved in several processes, including glutaminyl-tRNA aminoacylation; negative regulation of nitrogen compound metabolic process; and negative regulation of signal transduction. Predicted to act upstream of or within negative regulation of apoptotic process. Part of aminoacyl-tRNA synthetase multienzyme complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human QARS1 (glutaminyl-tRNA synthetase 1).

NR:

description
glutamine--tRNA ligase

GO:

id name namespace
GO:0006425 glutaminyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004819 glutamine-tRNA ligase activity molecular_function

KEGG:

id description
K01886 QARS, glnS; glutaminyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306976.1 True 2629 mRNA 0.49 23 22252273 22266629

Neighbor

gene id symbol gene type direction distance location
LOC113533224 LOC108265469,LOC108432124 coding upstream 40252 22205877 ~ 22212021 (+)
LOC113533222 LOC108265470,LOC108265625,LOC108265623,LOC108432118,LOC108432095 coding upstream 47113 22196749 ~ 22205160 (+)
LOC113533223 LOC108265625,LOC108265470,LOC108265623,LOC108432118,LOC107687125 coding upstream 57549 22187820 ~ 22194724 (+)
LOC113533311 LOC108265623,LOC108432095,LOC108432121,LOC108265625,LOC108265470,LOC108432118 coding upstream 70782 22174129 ~ 22181491 (+)
LOC113533433 st1s3,LOC108432118,LOC108265623 coding upstream 81526 22163978 ~ 22170747 (+)
mtor mtor,LOC107564227,LOC107727986,LOC107594963 coding downstream 429 22267058 ~ 22359048 (+)
exosc10 exosc10,LOC107682930 coding downstream 94161 22360790 ~ 22376465 (+)
ppih ppih coding downstream 111299 22377928 ~ 22409804 (+)
ybx1 ybx1,LOC106572208,LOC107595774,LOC107693424 coding downstream 144564 22411193 ~ 22416575 (+)
hes2.1 NA coding downstream 231129 22497758 ~ 22499212 (+)
G137017 NA non-coding upstream 102496 22148623 ~ 22149777 (+)
G136544 NA non-coding upstream 412421 21839632 ~ 21839852 (+)
G136532 NA non-coding upstream 426951 21824989 ~ 21825322 (+)
G136466 NA non-coding upstream 558571 21674858 ~ 21693702 (+)
G136433 NA non-coding upstream 890393 21360839 ~ 21361880 (+)
G137057 angptl7,LOC107727987,LOC107679102,LOC107594962,LOC107738924,LOC107687132 non-coding downstream 38100 22304729 ~ 22307615 (+)
G137086 espn non-coding downstream 200138 22466767 ~ 22467029 (+)
G137087 NA non-coding downstream 202005 22468634 ~ 22468839 (+)
G137088 NA non-coding downstream 204412 22471041 ~ 22471330 (+)
G137229 NA non-coding downstream 244276 22510905 ~ 22511176 (+)
LOC113533283 rbsn other upstream 128522 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 392605 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 454465 21781223 ~ 21797808 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other upstream 1504417 20744580 ~ 20747856 (+)
LOC113533440 erc2,LOC108264953 other upstream 1810082 20222415 ~ 20442191 (+)
LOC113533405 NA other downstream 240997 22507626 ~ 22509494 (+)
LOC113533432 gpr153,LOC107693426 other downstream 327905 22594534 ~ 22636989 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 981719 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 1247957 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 1483788 23750417 ~ 23757114 (+)

Expression


Co-expression Network