LOC113533181


Basic Information

Item Value
gene id LOC113533181
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18271945 ~ 18272850 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403400.1
GTGATAACATGCTTTTCTGTGAATATGCTTCCTTATACATAGCTTTTTATTCTCCCTTGCAGAATAGCATACAGTCAGGATATACCAGACTCAGAGATAAAGATGGTGTGTTTGAGATCACACTGGAACAACTTATGGTGTTTGTCTCTGGAACTGACCGAGGATCAGCACTTGGATTTTCCCCTCAGCCAACGCTGAATTTCATTCATGAGCCATTTCATAATGGCTGTTTGAACTTCCTCACCcaaatgcaattaaaaaatgaactgaaaatgaTTGAAA
>XR_003403401.1
ACCCCCCACCCTCGCAACTTCAAGGAGGTGTTCAGAACATCTACCTGTTCCAAGCGGAGCTGTCTGCTCCTGGAAGCAACCAGGATGGTGTGTTTGAGATCACACTGGAACAACTTATGGTGTTTGTCTCTGGAACTGACCGAGGATCAGCACTTGGATTTTCCCCTCAGCCAACGCTGAATTTCATTCATGAGCCATTTCATAATGGCTGTTTGAACTTCCTCACCcaaatgcaattaaaaaatgaactgaaaatgaTTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403400.1 True 282 lncRNA 0.39 2 18271945 18272850
XR_003403401.1 False 264 lncRNA 0.45 2 18272436 18272850

Neighbor

gene id symbol gene type direction distance location
rpl6 rpl6,LOC107699672,LOC107671003 coding upstream 13221 18252746 ~ 18258724 (+)
acaa2 acaa2,LOC107671002 coding upstream 20241 18241929 ~ 18251704 (+)
vsig8b LOC108265910 coding upstream 56802 18204157 ~ 18215143 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding upstream 80350 18144047 ~ 18191595 (+)
plat plat coding upstream 153870 18087941 ~ 18118075 (+)
dgcr6 dgcr6,LOC108265986,LOC103029434,LOC107721026,LOC108430318,LOC107572069 coding downstream 813 18273663 ~ 18275468 (+)
vgll4l LOC108265912 coding downstream 18639 18291489 ~ 18297481 (+)
lmx1bb lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 870697 19143547 ~ 19200105 (+)
zbtb34 LOC108265239 coding downstream 972898 19245748 ~ 19264636 (+)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327,LOC107723240 coding downstream 997776 19270626 ~ 19389662 (+)
LOC113533180 NA non-coding upstream 181 18270496 ~ 18271764 (+)
G134655 NA non-coding upstream 149784 18121879 ~ 18122161 (+)
G134598 NA non-coding upstream 187466 18074135 ~ 18084479 (+)
G134604 NA non-coding upstream 232639 18031925 ~ 18039306 (+)
G134586 NA non-coding upstream 323983 17947331 ~ 17947962 (+)
LOC113533555 NA non-coding downstream 123011 18395861 ~ 18416432 (+)
G135076 NA non-coding downstream 460548 18733398 ~ 18733630 (+)
G135085 NA non-coding downstream 539640 18812490 ~ 18812710 (+)
LOC113533586 NA non-coding downstream 597567 18870417 ~ 18873621 (+)
G135090 NA non-coding downstream 610518 18883368 ~ 18883781 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other upstream 223056 18030975 ~ 18048889 (+)
G134341 NA other upstream 975062 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1403177 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1533961 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1650179 16580257 ~ 16621766 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 163335 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1214637 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1552948 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 1907918 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 1949565 20222415 ~ 20442191 (+)

Expression


Co-expression Network