LOC113533633


Basic Information

Item Value
gene id LOC113533633
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 23002703 ~ 23006396 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403437.2
GAAACTGCGCCACTCAGGTGCTATCAGCGATTTTAATGAGACCGAAGCGGACTAAATGCGCAGGcagtaaaaaagagaaatgatgaagaCGCAAGAAATGCGGGCAAAAATACACCATTAAGACAGGTCAAGCCATAGGATTGATGGCAGTCAGGCAAGGCAGCAGCTGTCCGCAGGTAGTCTCCATTTAAAACCAGacaAGCAGCGAGGTTGATGGCCGTCAGGCAGGACAGCAGCTTTCAGCAGATAGTCCACATTTAAAAAATTAGAATTCAAGACCCCAATGAAAATGGCTGAGATGTCACTGAAGAGCTCTTACTGGGATGGAGAACCACATCAAGCCCGACAGCACCTCCTGCTGGCAGCATAATTGCTCCTCTGGCTCCACCTGTCTCGACATCTCCACCAGTGTCAGAGCCTGAGCCCAAGTCTGTCTCCCATCTCCAGTTTCAGCCTTCCATGCAAAGCAAAGACGTCATTTCTGAAGCACCACCATCCACACCGCCAGCTCCTGCAAAGCTTACATGGGGTGATATCACGGACAAAGAGGACGCTGGGCTGAAAATGTAGAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403437.2 True 574 lncRNA 0.50 5 23002703 23006396

Neighbor

gene id symbol gene type direction distance location
mfn2 mfn2,LOC107748965,LOC107710790,LOC107602467,LOC107678429 coding upstream 2098 22984527 ~ 23000605 (+)
plod1a plod1,plod1a,LOC107748983,LOC107698842 coding upstream 25614 22963502 ~ 22977089 (+)
clcn6 clcn6 coding upstream 86723 22899004 ~ 22915980 (+)
pex10 pex10 coding upstream 135683 22862326 ~ 22867020 (+)
kank3 kank3 coding upstream 296196 22685502 ~ 22706507 (+)
prdm16 prdm16 coding downstream 9961 23016357 ~ 23246352 (+)
tp73 tp73 coding downstream 261506 23267902 ~ 23304514 (+)
rer1 rer1,LOC107698848,LOC107595758 coding downstream 300608 23307004 ~ 23322846 (+)
LOC113533430 LOC108265027 coding downstream 318865 23325261 ~ 23350645 (+)
LOC117597818 NA coding downstream 329483 23335879 ~ 23339659 (+)
G137626 NA non-coding upstream 39349 22963131 ~ 22963354 (+)
G137613 NA non-coding upstream 49408 22951965 ~ 22953295 (+)
G137486 NA non-coding upstream 83670 22917264 ~ 22919033 (+)
G137401 si:ch211-251b21.1,LOC108265050,LOC108432140,LOC107691059,LOC107602462,LOC107755276,LOC107748962 non-coding upstream 272561 22725162 ~ 22730142 (+)
G137371 NA non-coding upstream 318672 22681865 ~ 22684031 (+)
G137650 NA non-coding downstream 89402 23095798 ~ 23159507 (+)
G137651 NA non-coding downstream 94211 23100607 ~ 23103666 (+)
G138014 NA non-coding downstream 741067 23747463 ~ 23750368 (+)
G138176 NA non-coding downstream 983502 23989898 ~ 23990097 (+)
G138239 NA non-coding downstream 1115214 24121610 ~ 24124569 (+)
LOC113533432 gpr153,LOC107693426 other upstream 365714 22594534 ~ 22636989 (+)
LOC113533405 NA other upstream 493209 22507626 ~ 22509494 (+)
LOC113533283 rbsn other upstream 878952 22092595 ~ 22123751 (+)
LOC113533434 creld1 other upstream 1143035 21825682 ~ 21859668 (+)
LOC113533123 LOC108265628 other upstream 1204895 21781223 ~ 21797808 (+)
tprg1l tprg1l,LOC107710788,LOC107698845 other downstream 241952 23248348 ~ 23261991 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other downstream 508190 23514586 ~ 23524705 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other downstream 744021 23750417 ~ 23757114 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other downstream 884020 23890416 ~ 23894725 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1005186 24011582 ~ 24013781 (+)

Expression


Co-expression Network