LOC113535080


Basic Information

Item Value
gene id LOC113535080
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 4486271 ~ 4494004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403565.2
TTTATGATCATTATGGTCACCTGTATGCAGACTGTCTCACCTGTATTTTGTTCTGTTATCATTTCCATCTGTGCAGAAATGGCTCCAGgttcatttgaaagaaaaggaaatacCTGCTGATGCTAAATGGTTTGAGGTTCTAAAACGAATGCATTCGGCAGTAGTGGCATCCCTCAGCCATGAAAAATGTGCAGCACTGAAAGTTCCTGCTGGAAGTTCTTAAACGCTGTCAGGTTGGATGGGGAGTGTTGCTGTACCTCTATATTCCGATTTCTCcagaatttcaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403565.2 True 288 lncRNA 0.42 3 4486271 4494004

Neighbor

gene id symbol gene type direction distance location
tfe3a LOC108265526,LOC108279478,LOC108440537 coding upstream 6646 4450576 ~ 4479625 (+)
fgd1 fgd1,LOC108266043,LOC107552218 coding upstream 40849 4394348 ~ 4445422 (+)
LOC113535168 LOC108265824,LOC108440552 coding upstream 97321 4376634 ~ 4388950 (+)
pcsk1nl LOC108265073 coding upstream 238614 4233994 ~ 4247657 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding upstream 308421 4153037 ~ 4177850 (+)
ntpcr ntpcr coding downstream 6781 4500785 ~ 4504839 (+)
cxxc1a cxxc1a,cxxc1,LOC108265945,LOC107727409,LOC107674299,LOC108440538,LOC107743112,LOC107701818 coding downstream 11409 4505413 ~ 4512377 (+)
mbd1a LOC108265790 coding downstream 18551 4512555 ~ 4540256 (+)
si:ch211-169p10.1 LOC108265917 coding downstream 49536 4543540 ~ 4603365 (+)
abcd1 abcd1,LOC108265308,LOC108440542,LOC107674359,LOC107727428,LOC107552221,LOC107743108,LOC107701814 coding downstream 110812 4604816 ~ 4623910 (+)
G126628 mecp2,LOC107735123,LOC106572920 non-coding upstream 128215 4318210 ~ 4358056 (+)
G126591 NA non-coding upstream 231509 4253744 ~ 4254762 (+)
G126549 LOC108265196 non-coding upstream 301191 4111574 ~ 4185080 (+)
G126529 NA non-coding upstream 353602 4069691 ~ 4132669 (+)
G126525 NA non-coding upstream 425205 4060279 ~ 4061066 (+)
G127105 NA non-coding downstream 278790 4772794 ~ 4795256 (+)
G127147 abt1 non-coding downstream 347422 4841426 ~ 4842134 (+)
G127155 NA non-coding downstream 391016 4885020 ~ 4939386 (+)
LOC117597829 NA non-coding downstream 557227 5051231 ~ 5053827 (+)
G127198 NA non-coding downstream 561629 5055633 ~ 5055834 (+)
ssuh2rs1 LOC108264961 other upstream 208194 4220650 ~ 4278077 (+)
si:ch73-233m11.2 LOC108265197 other upstream 381452 4095269 ~ 4104819 (+)
wdr13 wdr13 other upstream 708781 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 784568 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 948982 3445015 ~ 3537289 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 132081 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 249235 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 1353143 5847147 ~ 5907946 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other downstream 2262759 6756763 ~ 6811646 (+)
mrps36 LOC108265361 other downstream 2929997 7424001 ~ 7430997 (+)

Expression


Co-expression Network