LOC117597786


Basic Information

Item Value
gene id LOC117597786
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 208161 ~ 209413 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578543.1
GTACAACACCCAAGCCAGAGGGGCCTAcaaaacttcctgtttggtgaacTCCTAGGCCGCTTAGGCCTTCTGGTAAGGAACTGAGTTGTTAATCAGCTACAGGATCCTTTTCCCAAGGATTCTTATCAGCATACTCATGGGAGTCCGAGTAAAGACGACACAAACCTTGTGGCAAGTTCTCCACAGATGCATTTATCGAAAAGCAATGGAACACCTCGGCCTTTAAACAACAACTCCGATAAGACCAAGGGGGAGCCGACCCAGGGGGATAGGAagcaggagaggaaggaggTGATGAATGGGTCTACAGAAAGGAAGACCACGTCCTTGAGAAAAGCCCGATCTGAATCCTCCCTTTCCCTTTCCCCTTCCTCTTTC

Function

GO: NA

KEGG:

id description
ko04115 p53 signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578543.1 True 378 lncRNA 0.49 3 208161 209413

Neighbor

gene id symbol gene type direction distance location
ipo11 ipo11 coding upstream 187523 112 ~ 20638 (+)
LOC117597813 NA coding downstream 6748 216161 ~ 217382 (+)
LOC117597814 NA coding downstream 51986 261399 ~ 264259 (+)
fpgt fpgt coding downstream 125490 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 133249 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 201576 410989 ~ 456088 (+)
G124451 NA non-coding upstream 7218 197931 ~ 200943 (+)
G124432 NA non-coding upstream 10963 154481 ~ 197198 (+)
G124444 NA non-coding upstream 26494 180416 ~ 181667 (+)
G124437 NA non-coding upstream 40862 165164 ~ 167299 (+)
G124416 NA non-coding upstream 75446 132234 ~ 132715 (+)
G124481 NA non-coding downstream 132025 341438 ~ 341758 (+)
G124499 NA non-coding downstream 191502 400915 ~ 402096 (+)
G124506 NA non-coding downstream 226749 436162 ~ 436973 (+)
G124511 NA non-coding downstream 252099 461512 ~ 466459 (+)
G124512 NA non-coding downstream 254166 463579 ~ 464969 (+)
G124442 NA other upstream 29744 177662 ~ 178417 (+)
G124403 NA other upstream 122078 70073 ~ 86083 (+)
G124399 NA other upstream 157089 48978 ~ 51072 (+)
G124387 NA other upstream 184869 12688 ~ 23292 (+)
G124462 NA other downstream 63004 272417 ~ 330399 (+)
G124498 NA other downstream 190343 399756 ~ 407434 (+)
si:ch73-70k4.1 LOC108265358 other downstream 297651 507064 ~ 508910 (+)
cept1a LOC108265319 other downstream 396446 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other downstream 436553 645966 ~ 647953 (+)

Expression


Co-expression Network