LOC117597791


Basic Information

Item Value
gene id LOC117597791
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 54286 ~ 57248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578550.1
TTTTGGCACAAGTCCTGCTTTGTAAAACTTAGAAAGAATGAGAGCAAGTCATTATCATGGATCATATCAACACTGATGGCAGTGATGGAAGTGAATCTGAGAATGGCACTGAAAGTGAGAATATGGATGTGTCTATGAGTGCACCAGTGCAGATTGGGATGCAGAAGGATCACCCACCAAAAGAAGCCAAAGCTGGATGTTCTGGTTGTATTTTCTAAGTTATatatgtggttttgttttagtcatataactcataattatcttttttttaacctattttaatttgaaacaaaactCTATGTCATCATATCTCCCAGTCTTTATGGTTGTATgatgtgcatatttatatacttgtttgtttagtctCAAACACAGATGCTTTGCCCATGTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578550.1 True 393 lncRNA 0.36 3 54286 57248

Neighbor

gene id symbol gene type direction distance location
ipo11 ipo11 coding upstream 33648 112 ~ 20638 (+)
LOC117597813 NA coding downstream 158913 216161 ~ 217382 (+)
LOC117597814 NA coding downstream 204151 261399 ~ 264259 (+)
fpgt fpgt coding downstream 277655 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 285414 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 353741 410989 ~ 456088 (+)
G124400 NA non-coding upstream 103 52848 ~ 54183 (+)
G124398 NA non-coding upstream 6738 47320 ~ 47548 (+)
G124397 NA non-coding upstream 10329 43748 ~ 43957 (+)
G124385 NA non-coding upstream 25376 20663 ~ 28910 (+)
G124388 NA non-coding upstream 28320 18106 ~ 25966 (+)
G124405 NA non-coding downstream 16794 74042 ~ 76052 (+)
LOC117597868 NA non-coding downstream 36799 94047 ~ 96304 (+)
LOC113525545 LOC108263117,LOC108268894,LOC108270753,LOC108273545,LOC108264971,LOC108273692,LOC108273546 non-coding downstream 39120 96368 ~ 103306 (+)
LOC117597797 LOC108268894,LOC108261282,LOC108273219,LOC108273545 non-coding downstream 46956 104204 ~ 108810 (+)
G124416 NA non-coding downstream 74986 132234 ~ 132715 (+)
G124399 NA other upstream 3214 48978 ~ 51072 (+)
G124387 NA other upstream 30994 12688 ~ 23292 (+)
G124403 NA other downstream 12825 70073 ~ 86083 (+)
G124442 NA other downstream 120414 177662 ~ 178417 (+)
G124462 NA other downstream 215169 272417 ~ 330399 (+)
G124498 NA other downstream 342508 399756 ~ 407434 (+)
si:ch73-70k4.1 LOC108265358 other downstream 449816 507064 ~ 508910 (+)

Expression


Co-expression Network