LOC117597827


Basic Information

Item Value
gene id LOC117597827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 2284449 ~ 2286416 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578585.1
ctgttgaattctggactctgactggtcagaagctggtgattcattttcagttCTCAGGTTGTCTCTCAGAGAGGATCTTTAAAGTTTCAATGCAGACACTAAAcagtgtttctctatcagaaagAGCTCCATGCAGAACCCTTTTTgtgaagctaagaacccttatttACCCAGGAACCCCTTAAAGAACTCtaaaagaacccttaaagaacccttttccCAAGAGTGTGTGCATTAACTGGTTGGAGGTTAAGACCTtgagtcgaatgcagcatattCTTTTCTCAGCAATTATAAGAGAAGGTTGATGCCCAATACTAAAACTTCTTCAGGATTCTTCACTGTCTGGAGGATTGTGATTTTGTCCTTGAGGAAAGTCAGCGTGTGAATAAAGCAGCATGGAGCTCAGCAGCTCTCCTGTAACCTGAGGACTGACCCagcatgcatctctctctcgTGGACGCTGCAAGACATTTGGATTTTATTTCGAGTCAAAAGGCTGAAGCTCAAATCTGCACTGCCTTCGAGGAGattcataaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578585.1 True 545 lncRNA 0.42 3 2284449 2286416

Neighbor

gene id symbol gene type direction distance location
LOC113535241 LOC108265201 coding upstream 407934 1853372 ~ 1876515 (+)
atp2b3a atp2b3a,LOC108265719,LOC107755305,LOC107758015,LOC107699155,LOC107603076 coding upstream 432899 1820191 ~ 1851550 (+)
dedd dedd,LOC108265722,LOC108411641,LOC106572035 coding upstream 473116 1809014 ~ 1811333 (+)
bgna LOC108265721,LOC107577956 coding upstream 481776 1789630 ~ 1802673 (+)
si:dkey-6n6.1 LOC108265720 coding upstream 500357 1775656 ~ 1784092 (+)
tab3 tab3 coding downstream 3035 2289451 ~ 2304783 (+)
prrg1 prrg1,LOC108265743 coding downstream 50925 2337341 ~ 2347459 (+)
ccdc181 ccdc181 coding downstream 74538 2360954 ~ 2366245 (+)
fsd1 fsd1,LOC107750605,LOC107717569,LOC107657921,LOC107585848,LOC107700007 coding downstream 82923 2369339 ~ 2388945 (+)
mpnd mpnd,LOC106591182,LOC107750615 coding downstream 122909 2409325 ~ 2418955 (+)
G125306 nexn non-coding upstream 18925 2261351 ~ 2265524 (+)
G125239 NA non-coding upstream 27663 2059317 ~ 2256786 (+)
G125312 NA non-coding upstream 31933 2251442 ~ 2252516 (+)
G125276 LOC108265808 non-coding upstream 113434 2169561 ~ 2171015 (+)
G125208 NA non-coding upstream 291045 1960604 ~ 1993404 (+)
G125344 NA non-coding downstream 16532 2302948 ~ 2303492 (+)
G125334 NA non-coding downstream 62799 2349215 ~ 2351001 (+)
G125362 cpox non-coding downstream 70797 2357213 ~ 2358821 (+)
G125332 NA non-coding downstream 135142 2421558 ~ 2426331 (+)
G125337 sh3gl1,LOC108265290,LOC107750655,LOC107700047 non-coding downstream 145310 2431726 ~ 2432649 (+)
alkal1 LOC108265007 other upstream 52309 2216102 ~ 2232140 (+)
LOC113535242 glis1 other upstream 296877 1877028 ~ 1987572 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other upstream 477659 1803475 ~ 1806790 (+)
G125062 LOC108265639 other upstream 937864 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 1082523 1155413 ~ 1201926 (+)
LOC113535041 edem3 other downstream 559293 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1049964 3336380 ~ 3347747 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other downstream 1158599 3445015 ~ 3537289 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other downstream 1398477 3684893 ~ 3701703 (+)
wdr13 wdr13 other downstream 1464088 3750504 ~ 3777490 (+)

Expression


Co-expression Network