LOC117597837


Basic Information

Item Value
gene id LOC117597837
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 8679642 ~ 8717232 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578600.1
gcgtgagtgagagagagagagagagagagagagagttgctAAAGTTCGGCGCTGTGCCTCGAGAAGCCCGCGGTGTTGGAAAAGGTTACGACggagatttcagggaaaagaagaggcagaaactcGGTGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAATAATTCTTGGCGAGCACGacGGAGCAAACCACTGCTGGAGCTTATTTGCATGAAATAAAGCAGCATTCAGACAGAGGCAGGACCAGTAAATATCTCCACTCACTCTGCTCCCTTTTGGAGGACTGCAATCTCTTTTTTGGTTAAAGAAATTAACTGTTGCATACGTCCAGCTTCCTTCTGGCATGAAGAGTTACAACTGTGACAGTTTGCCACCTCGAAGGAATACAACTGggTCACTGGATCTCaactcaactgaacacctacAAGAAAAAGTTTGGAGTGATGTGTTAGAAACCACTCTTCACCATCATCGtaatcaaaacaccaactgagggaagcCTTTGGAAAATCGGTGTGCCATTTCTTGTACAATCCATGCCAAGTTGGTGCACTTCATGACAGCTGAGACAGCTCGAGCTGTAGGATAAGGCGGcacaggtcagaggtcaccaGAGCATGCTGGACAAGAAGCTTGTTCGTCCTACTGACTGACTCTGTTGTTTAATCGTGTATGAAATAAATCGTATCACAGGTTCTTATGTGGCTGTGTGGAATTTAGAGTATTTTAGGCACTTgatctctttttctttaatctagtatgtatgtatctagTTTTATGAACTTAGGTgaactcattttttttatttatgcatttatttctgtcttttttcctttcttccccCAAAAATAATCTTCCAAAAGAAAACGTTTAATCTCTGCATTTTAATTGTTTGTAAGCTATATGTATTTTCCCTTTAGttaattacatgttttattCAATTAATCTTTTTGTCTTGGCTTCTAAACACCCATTAACCacattgtaatttatttatctatttatttacataataaaaacaaagcgAAACAATA
>XR_004578601.1
gcgtgagtgagagagagagagagagagagagagagttgctAAAGTTCGGCGCTGTGCCTCGAGAAGCCCGCGGTGTTGGAAAAGGTTACGACggagatttcagggaaaagaagaggcagaaactcGGTGAACAACCCgacaaaaagttttacttcCAACGGCAACAGTAATAATTCTTGGCGAGCACGacGGAGCAAACCACTGCTGGAGCTTATTTGCATGAAATAAAGCAGCATTCAGACAGAGGCAGGACCAGTAAATATCTCCACTCACTCTGCTCCCTTTTGGAGGACTGCAATCTCTTTTTTGGTTAAAGAAATTAACTGTTGCATACGTCCAGCTTCCTTCTGGCATGAAGAGTTACAACTGTGACAGTTTGCCACCTCGAAGGAATACAACTGggTCACTGGATCTCaactcaactgaacacctacAAGAAAAAGTTTGGAGTGATGTGTTAGAAACCACTCTTCACCATCATCGtaatcaaaacaccaactgagggaagcCTTTGGAAAATCGGTGTGCCATTTCTTGTACAATCCATGCCAAGaaaaatgcaaaaaatactTTGGGAAgatattttttcacattacaAGAAACTCTTCAAAGGATGAGAAAATACTAGACAATTGCCTGCAGCAGC

Function

GO:

id name namespace
GO:1900052 regulation of retinoic acid biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578600.1 True 1043 lncRNA 0.40 4 8679642 8716929
XR_004578601.1 False 646 lncRNA 0.44 4 8679642 8717232

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 138216 8483083 ~ 8541426 (+)
LOC113534163 LOC108265188,LOC108425021,LOC106518891 coding upstream 277095 8394989 ~ 8402547 (+)
si:dkey-72l14.3 LOC108265127,LOC107717507 coding upstream 377969 8299355 ~ 8301673 (+)
LOC113528372 fsbp coding upstream 556756 8117577 ~ 8122886 (+)
si:dkey-20d21.12 NA coding upstream 720425 7954723 ~ 7959217 (+)
LOC113533404 NA coding downstream 185016 8902248 ~ 8915811 (+)
sema3b sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 232982 8950214 ~ 9002824 (+)
pym1 pym1,LOC102777374 coding downstream 448746 9165978 ~ 9169576 (+)
LOC113526950 LOC108266051 coding downstream 457867 9175099 ~ 9180830 (+)
mc3r mc3r,LOC108265186,LOC108425022,LOC103045867,LOC107751456 coding downstream 577148 9294380 ~ 9295483 (+)
G129407 NA non-coding upstream 129660 8549769 ~ 8549982 (+)
G129401 NA non-coding upstream 133646 8545770 ~ 8545996 (+)
G129318 NA non-coding upstream 192195 8487231 ~ 8487447 (+)
G129218 NA non-coding upstream 449506 8228740 ~ 8230136 (+)
G129170 NA non-coding upstream 494454 8183169 ~ 8185188 (+)
G129440 NA non-coding downstream 6432 8723664 ~ 8724070 (+)
G129439 NA non-coding downstream 8220 8725452 ~ 8725888 (+)
G129621 NA non-coding downstream 286237 9003469 ~ 9006784 (+)
G129704 NA non-coding downstream 395552 9112784 ~ 9123869 (+)
G129707 NA non-coding downstream 402706 9119938 ~ 9134935 (+)
G129247 borcs6,si:dkey-72l14.4,LOC107717508,LOC107711970,LOC107556497,LOC107669648 other upstream 366986 8307164 ~ 8312656 (+)
LOC113526371 NA other upstream 707893 7968235 ~ 7971749 (+)
smim1 smim1 other upstream 818072 7856004 ~ 7861570 (+)
mrps36 LOC108265361 other upstream 1248645 7424001 ~ 7430997 (+)
phf19 phf19,LOC107599052,LOC106580128,LOC106585785,LOC107674297 other upstream 1867996 6756763 ~ 6811646 (+)
cebpb LOC108265421 other downstream 744856 9462088 ~ 9471279 (+)
LOC113532719 LOC108265185 other downstream 943583 9660815 ~ 9665693 (+)
G130390 NA other downstream 1640714 10357946 ~ 10358315 (+)
zmynd12 zmynd12,rimkla,LOC106567384,LOC101062827 other downstream 1826687 10543919 ~ 10563561 (+)
tmem51a tmem51 other downstream 1965846 10683078 ~ 10696831 (+)

Expression


Co-expression Network