LOC113533374


Basic Information

Item Value
gene id LOC113533374
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25309905 ~ 25333613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578606.1
CCCTCATAGACAGAATGTCTTCAATGAAGAAGGACGTCAGCTGTCTGTTTGAGGAGGCCATGTCGACTGGCAGGAACCACGCAGTCTCTCGGCGTGTCGCTTTGTGCAGTCTAGCCCAGTCAGGAGCTGACGAGATTTATTATGAAACTGGAGATGAGGACTCTCCTGCCGTCTCTGGGCATCAGGCTTCGGGTGAACACCAGGGGAAACTTGCAGAGCGGCTCCGTGGTCAGGCAGGGTCAAGGAAGCCTCAAGGACATCCATCCTAGTAGTATGATGTGGTTTTTTGAGACAAGTGGCTCTTATAAGACAGATAAAGTACACAGTCAGATTGCAGCATCAAAGCCTGAGTGACAGAATGTCTTCATTCACTGAATAAACAGCCCTTGGATATCAGCATTTCTACAcagGAGCCGAAGTCGTCAGCGCTGAGGACGCATTTCATCTGCTCTCCCGGACTGAAGGCGGGTTTGTCCGGGCTGTAGAGCAGCTCCAGGCTGCGGCTGAGGGCA
>XR_004578607.1
CCCTCATAGACAGAATGTCTTCAATGAAGAAGGACGTCAGCTGTCTGTTTGAGGAGGCCATGTCGACTGGCAGGAACCACGCAGTCTCTCGGCGTGTCGCTTTGTGCAGTCTAGCCCAGTCAGGAGCTGACGAGATTTATTATGAAACTGGAGATGAGGACTCTCCTGCCGTCTCTGGGCATCAGGCTTCGGGTGAACACCAGGGGAAACTTGCAGAGCGGCTCCGTGGTCAGGCAGGGTCAAGGAAGCCTCAAGGACATCCATCCTAGTAGTATGATGTGGTTTTTTGAGACAAGTGGCTCTTATAAGAAATGTTGGTGTTTCAGACAGATAAAGTACACAGTCAGATTGCAGCATCAAAGCCTGAGTGACAGAATGTCTTCATTCACTGAATAAACAGCCCTTGGATATCAGCATTTCTACAcagGAGCCGAAGTCGTCAGCGCTGAGGACGCATTTCATCTGCTCTCCCGGACTGAAGGCGGGTTTGTCCGGGCTGTAGAGCAGCTCCAGGCTGCGGCTGAGGGCA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578606.1 False 512 lncRNA 0.52 5 25309905 25333613
XR_004578607.1 True 529 lncRNA 0.52 5 25309905 25333613

Neighbor

gene id symbol gene type direction distance location
slc25a37 slc25a37,LOC107559458,LOC107710846,LOC107747712 coding upstream 18330 25276381 ~ 25291575 (+)
trnae-cuc_21 NA coding upstream 38225 25271609 ~ 25271680 (+)
entpd4 entpd4,LOC107710847,LOC107747713,LOC107698120 coding upstream 40456 25257998 ~ 25269449 (+)
chmp7 chmp7,LOC107710849,LOC107698119,LOC107559457,LOC107678414 coding upstream 53522 25249745 ~ 25256383 (+)
lgi3 lgi3,LOC108265401,LOC108426696,LOC107698096,LOC107678470,LOC107559454 coding upstream 62892 25235094 ~ 25247013 (+)
LOC113533297 rhobtb2 coding downstream 101588 25435201 ~ 25446874 (+)
LOC113533497 pebp4 coding downstream 120026 25453639 ~ 25543588 (+)
bin3 bin3,LOC107665194,LOC107678406,LOC107710841 coding downstream 230208 25563821 ~ 25606864 (+)
b2ml b2m coding downstream 329181 25662794 ~ 25665298 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding downstream 333312 25666925 ~ 25671900 (+)
G138907 NA non-coding upstream 24957 25277297 ~ 25284948 (+)
LOC113533216 NA non-coding upstream 460361 24848068 ~ 24849544 (+)
LOC113533328 LOC108265709 non-coding upstream 526480 24730987 ~ 24783425 (+)
G138578 NA non-coding upstream 662454 24646779 ~ 24647451 (+)
G138535 NA non-coding upstream 807534 24502086 ~ 24502371 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding downstream 87441 25421054 ~ 25428188 (+)
G138961 NA non-coding downstream 115002 25448615 ~ 25451577 (+)
G139166 NA non-coding downstream 338905 25672518 ~ 25683091 (+)
G139172 NA non-coding downstream 476562 25810175 ~ 25815041 (+)
LOC113546140 NA non-coding downstream 615236 25948849 ~ 25950449 (+)
LOC113533115 gnrh1 other upstream 175647 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1296124 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 1415180 23890416 ~ 23894725 (+)
G138010 iqsec2,LOC108265842,LOC108442091 other upstream 1552791 23750417 ~ 23757114 (+)
pabpc1l pabpc1l,LOC108265404,LOC108414618,LOC107573965,LOC107702880 other upstream 1785200 23514586 ~ 23524705 (+)
egr3 egr3 other downstream 218281 25551894 ~ 25558731 (+)
LOC117597866 NA other downstream 575962 25909575 ~ 25916807 (+)
car15 LOC108264895 other downstream 1066578 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 1229207 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 1292440 26626053 ~ 26729946 (+)

Expression


Co-expression Network