LOC113546140


Basic Information

Item Value
gene id LOC113546140
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 25948849 ~ 25950449 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578613.1
GTGATCTAAACCATCGGTGTGTATGTTCACAACCCGCCcctttttctgctttatttaaaaGGAAGAATCTGCTGCTGGTTGCAGAATTTACAACACTGAAAATATTCCAACTTGGAAACATGgctttGCTGAAGAAGACATTGGTGGGAGGTTTTGTCCTGTTTGGCATTATTCCTCTGATTCATGCCTGCTCGTTGATGGACGCTGGTGGCaaagATCAGTGTCAGGATTACTTGGATTATTCATGGCACCCACATGGATCCACCTGGACAAACCGCTGCTGTGTTACATGCACTTGTAGGCCTGGATACATGGTCTGCTGCTCTgaATTTCAGAAGTCTGTGAGCCCTGGCTGCACCCTGCAAAAGGACtttaaaacatgcaaatataCAGTGATTAAGAACGACCCATCAAGTCAACTCCGTTTAAATTTGTTGAGACAGAAGTTTCAAAATCAAGGCTCACAGACTGTCATATAAGGCCACTGTGCAAACAATAATGTAGGTAGAATGTGAGCCTTTTGTAGTTTAGTCTGAGAAATCTGATCTTACAATAAAGCATTACACAAAACAATTGTTTAGTGTTTTTGAAACAGACTGAGTCTTGTATATTAACATAATTAACTGTGTACTATAATCTGATTTGGTGAGACTGAAGATGATCAGTGGGAGAAAAATACTTCGCTGCATTGATTCTTCATTGTTAAGTTCAGATGCTGTATGTTCTTTGATGGTGGGTTAAGCTGACCAGCATCATCTATACTACATATGATTCTCTTACTATATTCATGAACCAGGCAATGCTGAGCTCTTCTGAAAGCACAATAAACACCCTCACACTATGCATTTACACATCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578613.1 True 858 lncRNA 0.40 4 25948849 25950449

Neighbor

gene id symbol gene type direction distance location
LOC117595683 NA coding upstream 8218 25938646 ~ 25940631 (+)
LOC113537824 NA coding upstream 29586 25917747 ~ 25919263 (+)
disp3 disp3,LOC107710822,LOC107553125,LOC107678473,LOC107562651 coding upstream 144407 25762965 ~ 25804442 (+)
si:dkey-32e23.4 si:dkey-32e23.4,LOC108426682,LOC108265374,LOC103036512,LOC107710834,LOC107562650,LOC107665195,LOC107678420 coding upstream 245724 25686205 ~ 25703125 (+)
ubl4a ubl4a,zgc:56596,LOC107665196,LOC107553161,LOC107562643 coding upstream 276949 25666925 ~ 25671900 (+)
antxr1a antxrl,antxr1a,antxr1,LOC108265351,LOC107661337,LOC107710819 coding downstream 2518 25952967 ~ 25989162 (+)
LOC113546011 LOC108265344 coding downstream 132450 26082899 ~ 26087466 (+)
fahd2a fahd2b,LOC108440674,LOC107753161,LOC107703178,LOC107712485,LOC102211511,LOC105902774 coding downstream 146209 26096658 ~ 26107903 (+)
npc1l1 npc1l1 coding downstream 373967 26324416 ~ 26341597 (+)
myl7 myl7,LOC107753162,LOC107554405,LOC107703146,LOC106580582 coding downstream 417966 26368415 ~ 26371797 (+)
G139172 NA non-coding upstream 133808 25810175 ~ 25815041 (+)
G139166 NA non-coding upstream 265758 25672518 ~ 25683091 (+)
G138961 NA non-coding upstream 497272 25448615 ~ 25451577 (+)
LOC117597843 LOC108261789,LOC108265915 non-coding upstream 520661 25421054 ~ 25428188 (+)
LOC113533374 NA non-coding upstream 615236 25309905 ~ 25333613 (+)
G139235 LOC108265343 non-coding downstream 82145 26032594 ~ 26036133 (+)
G139551 NA non-coding downstream 562443 26512892 ~ 26519482 (+)
G139647 NA non-coding downstream 928187 26878636 ~ 26899417 (+)
G139653 NA non-coding downstream 940628 26891077 ~ 26894530 (+)
G139686 NA non-coding downstream 1156480 27106929 ~ 27108878 (+)
LOC117597866 NA other upstream 32042 25909575 ~ 25916807 (+)
egr3 egr3 other upstream 390118 25551894 ~ 25558731 (+)
LOC113533115 gnrh1 other upstream 814591 25132741 ~ 25134258 (+)
fkbp1aa fkb1b,fkbp1aa,fkbp1a,fkbp1ab,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1935068 24011582 ~ 24013781 (+)
praf2 praf2,LOC107756831,LOC107702816,LOC107691574,LOC107565129 other upstream 2054124 23890416 ~ 23894725 (+)
car15 LOC108264895 other downstream 449742 26400191 ~ 26462321 (+)
LOC117597788 NA other downstream 612371 26562820 ~ 26567932 (+)
rimbp2 rimbp2,LOC108414005 other downstream 675604 26626053 ~ 26729946 (+)
fam160b2 LOC108265858 other downstream 1232572 27183021 ~ 27261741 (+)
adam9 adam9,LOC107591921,LOC107722987,LOC107691559,LOC107566966,LOC107756844,LOC107702867 other downstream 1316726 27267175 ~ 27295337 (+)

Expression


Co-expression Network