LOC117597859


Basic Information

Item Value
gene id LOC117597859
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12519894 ~ 12533258 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578623.1
GGATTATCAAAAACCTCCCGGAACTCCTGTTTGAACTCTATGAATGTTTGGCGTAATGTCATCTGATCTAACCAGGGGACAGACCAGGTGAATGGTTTTCTGGGATTCTCAATCTATGCAGCATGACAGGGGAGTGAGAGACAAGTTTGAAAACGACTAGGGCTCCTTGAAGTGAGCACACCATCTGCCAGCTTATGTGTGGTTATCCAGGGTGAGCCCAGAACGAAACGGTTTCCAGGTATAATGTGCCTGTGCATGTCTAGAGGGGGATTTTTCACCAGGTAGGTTTTCTGTTCCCCAGTGGGAAAATTTGAGGGAAACAAGTGTAATATTAAGTATTTCAGCTAGTTTTTCATCCATGGAGTTTCCTGCTACCCTGGAGTCCATGAGCTCTGGAAAACAGTTGGATTATGAAAACCACGGTATGTTCTCTTCCAGAATAACAAAGTACTCATCCACAGGACATGAGGGCTTACGGAATGATTTGgAACTTGGGGACCATGGAAGCCCTCTGCTTGTTTGTTCCCTGTTGATGCGAGGGTTTGTTGCCAGGGGTTCCACAAGACTTGTGTAGGAACAGCATGTTCATGCTGG
>XR_004578624.1
GGATTATCAAAAACCTCCCGGAACTCCTGTTTGAACTCTATGAATGTTTGGCGTAATGTCATCTGATCTAACCAGGGGACAGACCAGGTGAATGGTTTTCTGGGATTCTCAATCTATGCAGCATGACAGGGGAGTGAGAGACAAGTTTGAAAACGACTAGGGCTCCTTGAAGTGAGCACACCATCTGCCAGCTTATGTGTGGTTATCCAGGGTGAGCCCAGAACGAAACGGTTTCCAGGTATAATGTGCCTGTGCATGTCTAGAGGGGGATTTTTCACCAGGTATGTTCTCTTCCAGAATAACAAAGTACTCATCCACAGGACATGAGGGCTTACGGAATGATTTGgAACTTGGGGACCATGGAAGCCCTCTGCTTGTTTGTTCCCTGTTGATGCGAGGGTTTGTTGCCAGGGGTTCCACAAGACTTGTGTAGGAACAGCATGTTCATGCTGG

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578623.1 True 594 lncRNA 0.46 4 12519894 12533258
XR_004578624.1 False 453 lncRNA 0.48 4 12519894 12533258

Neighbor

gene id symbol gene type direction distance location
kcnc4 kcnc4,LOC107731196 coding upstream 10228 12478618 ~ 12509666 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding upstream 44144 12450275 ~ 12475750 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding upstream 71910 12438112 ~ 12447984 (+)
sort1b LOC108265432,LOC108442120 coding upstream 86748 12414194 ~ 12433146 (+)
amigo1 amigo1 coding upstream 123234 12390255 ~ 12396660 (+)
alx3 alx3 coding downstream 53541 12586799 ~ 12597439 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding downstream 113431 12646689 ~ 12649107 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding downstream 117967 12651225 ~ 12654683 (+)
LOC113531715 LOC108265567,LOC108414659 coding downstream 125770 12659028 ~ 12662145 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 242668 12775926 ~ 12783157 (+)
G131282 NA non-coding upstream 293532 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 302680 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 802009 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 967863 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 1160514 11355449 ~ 11359380 (+)
G131606 NA non-coding downstream 156909 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 167454 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 179367 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 275865 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 404046 12937304 ~ 12941456 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 289893 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 524042 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 805862 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 823103 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 886050 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 66440 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1171908 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1357146 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1416679 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1788914 14322172 ~ 14323450 (+)

Expression


Co-expression Network