LOC117597875



Basic Information


Item Value
gene id LOC117597875
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 3809256 ~ 3816185 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XR_004578636.1
CCTTCACAGAAACCGGAGCTGAAGCTTGAACTCCAACTCGGACCGAAGGAACCATGCTGCACCCGATTATGATCGGTATTATAATCATCAACACTTCCATTACTGTGGTTTACTGGGCCTACATCCTGACACAAGCCTTCTGCACCAAGACTGAAGACGAGGATGATCCAGAATAACGTCCGAGTGAGGGCTGAGAAGAGCTTagactagattttttttttagtttgtgtgtgtttttttttttttttttttttgatatattCATATACTAAGCTTAGGTTCATCGTTTAACTCATTTAGTTCAAGTGATTTAATCTTCGTCAGTGATTTAATCTTCATCAGCTTCAGATTGTAGAAAACACCATCATTTTGTCCAGACACCGTCCACAGGATCTCCTCGAGATCAACCTTTTAGTGCTTAATAACGTGAAGGAGACGACTGAAAAGGACTGAAGTcaaacaaatagaaaagcaacttcaaaaataataaaaagACTGGCTACTCGGCCCTGACCCAGAGGAAaatgaggaggaagaagaggtgCTGGAGTCGTCTGGACAGGAAGACGGAGCAGGAGAGAGGAAAGGCAAGGAGGAAGAGATCCTCAGAGCCACCAGCTGAGATGAGAACAATCCAGGATTTAAACTTTCATTAATAACCTAATGACAATGTTGATTTTCCTgtaaaacaccaaaaacaccacGAGAACCGACCGGATTAGATTTCTCTTGCCGTGtgctctgctgaaaaaaaaaaaaaacccaaactcATTCATTTTAACGATGTGCATTTCAACCGTTtgatctttaaataaaaaccatTACCTCCAGCAGTTTCACTGGTCAAGGTGTAAAGTGAAGTCTGTCCTATAAAGGATACTGTTTTAGTAGTTGGCTTTAAACTAATTCTGTGTAGAACCTCAGCTACAGACGGTTAAGGTGTGCCATAAGCAGTAGCACATAAAGCAATCGAACTCTAAATAATGTTTTACATCCGTACAGGAACACTTTCCTATAACATCCACAAATGAGCATTATGCTAATACTTCactaatgatgaattaataatcCACTAATCCTTAGCACATGAGGAACTAATGAGGTGTATACATTAACGACCTACTCTAGCCATTAATAAAGGTAATAGTTAAGCATTAACATCTTGTTAACTTATTCTGTTAATCAATATCACAGCTTATGCATGGCTTTGTGCAACTTATATtaccaaatatataaaatcttaCCAAAAACACTGCAGAGTAATGTAG

Function


GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism

RNA


RNA id representative length rna type GC content exon number start site end site
XR_004578636.1 True 1268 lncRNA 0.38 3 3809256 3816185

Neighbor


gene id symbol gene type direction distance location
dohh dohh,LOC106584359,LOC107745802 coding upstream 1772 3802656 ~ 3807484 (+)
haus5 haus5 coding upstream 17635 3778297 ~ 3791621 (+)
mob3a LOC108264984,LOC108439653,LOC100699828,LOC102783145,LOC107585875,LOC104921817,LOC103368804,LOC101067073,LOC107731185 coding upstream 137567 3659850 ~ 3671689 (+)
LOC113534995 LOC108264986,LOC108439652,LOC107695253,LOC107585931,LOC107548917,LOC107676994 coding upstream 151212 3634700 ~ 3658044 (+)
fcho1 fcho1,LOC108264992,LOC107751067,LOC103395380,LOC100695123 coding upstream 409829 3349812 ~ 3399427 (+)
smim24 NA coding downstream 2219 3818404 ~ 3821091 (+)
abtb1 abtb1,LOC107674366,LOC107696919 coding downstream 302850 4119035 ~ 4131370 (+)
slc6a6a slc6a6a,LOC108264963,LOC108441104,LOC107696920,LOC107552205,LOC107714566 coding downstream 336852 4153037 ~ 4177850 (+)
pcsk1nl LOC108265073 coding downstream 417809 4233994 ~ 4247657 (+)
LOC113535168 LOC108265824,LOC108440552 coding downstream 560449 4376634 ~ 4388950 (+)
LOC117597831 NA non-coding upstream 74158 3719342 ~ 3735098 (+)
G126408 NA non-coding upstream 177624 3629802 ~ 3631632 (+)
G126401 NA non-coding upstream 233953 3568989 ~ 3575303 (+)
G125626 NA non-coding upstream 581592 2993850 ~ 3227664 (+)
G125593 NA non-coding upstream 953481 2854757 ~ 2855775 (+)
G126453 NA non-coding downstream 17493 3833678 ~ 3838635 (+)
G126493 NA non-coding downstream 90894 3907079 ~ 3964096 (+)
G126454 NA non-coding downstream 154194 3970379 ~ 3973284 (+)
G126525 NA non-coding downstream 244094 4060279 ~ 4061066 (+)
G126529 NA non-coding downstream 253506 4069691 ~ 4132669 (+)
wdr13 wdr13 other upstream 31766 3750504 ~ 3777490 (+)
mknk2b mknk2,mknk2b,LOC107695256,LOC107585877,LOC107731184 other upstream 107553 3684893 ~ 3701703 (+)
acsbg2 acsbg2,LOC107731199,LOC107676759,LOC107750933,LOC107695249 other upstream 271967 3445015 ~ 3537289 (+)
znf692 znf692 other upstream 461509 3336380 ~ 3347747 (+)
LOC113535041 edem3 other upstream 891025 2845709 ~ 2918231 (+)
si:ch73-233m11.2 LOC108265197 other downstream 279084 4095269 ~ 4104819 (+)
ssuh2rs1 LOC108264961 other downstream 404465 4220650 ~ 4278077 (+)
plxnb3 plxnb3,LOC108265307,LOC107584917,LOC107601751 other downstream 809900 4626085 ~ 4727880 (+)
srpk3 srpk3,LOC103374712,LOC103366878,LOC107101350,LOC100702848 other downstream 927054 4743239 ~ 4766376 (+)
tbc1d22b tbc1d22b,LOC108438566,LOC107674367,LOC107734531,LOC107653399 other downstream 2030962 5847147 ~ 5907946 (+)

Expression



Co-expression Network