LOC117597877


Basic Information

Item Value
gene id LOC117597877
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17376303 ~ 17378236 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578638.1
GGTTTAATTGAGTGTGCCCTATTATAGTCAAGCTGTGCTTGGACCCATCTTTCTTAAACATCTGTTGGCGTGGTGATGGTTAAACTGTTCATAAATGCCAATTGCTGGCTGTTGGACTCCTgcattgtttgtttcttttccaGCCAGGGAAATGATCACGTTCATTCCCGTTAGGAACAGGATGGGGGAAATGtttttgacAGTGCTCTGAAAAGCGTGGGTTGAATAAATGTGAGCCCAAAGCTTGGCTAAAATTCCACCTGCCTCCCGAGTCTTGCTCCACTCCCTCGCACACCAGGTGCTACAGTGGTGCTGGAATCCAGGATTGGGGAAGACTATGACTAAAAGTTGCTTGTGAAAACATACCCCAAACTGGCAAATGTCTCTGGTGGCTGGTTATTGCACAAGCTGGTTATTGCACAAGTCCTCAGTGGGCAGCACAAATTGGTTGTCATCCCTTCTGACTAAGATGGATACAGTCAGCAGCAATTAAAAGCAGTGAGTGGGAATGCGAAATGCATCCTCTGCATTGCTCCTCTACAAGAAGAATTTGAAAATACTGCATTGCCACCAGAAGcaaaggaattttaaaaaatgcccaAAGCCCAGTGTACAATGTGCAGCAAAATGGTTCCTCTTCAGACTCTTCCAATTCATATCCTGGGATGCCAGGAGGAGCATGTGGatttgtgcatttctttttgtgcctttaattttttttttggattaacTAAAATGTAGTACAATTCTTTAAATGAGTTGGCTGTCTCATGTGTTGTTTCATCTCTAGGACAATTATACAGAAGAAGAACATTTAGCGCTGAATTCTATGGACACCCGGACGAAGATAGTGggagatttaaataaataaaaagtcttgACCCAGTCTCTTGAttataagtatatattttaaagtagcttaaaaacaaagcaaaacaaacaaaaaaaaccccaaagctTTATTCActtgcattttaaattaatttgctaGACTTCTGAGTGTCCTGTGtgcaaaaaagtatttaatgtGCAGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578638.1 True 1036 lncRNA 0.41 3 17376303 17378236

Neighbor

gene id symbol gene type direction distance location
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 23713 17349316 ~ 17352590 (+)
LOC117597835 NA coding upstream 294353 17061058 ~ 17081950 (+)
LOC113524948 NA coding upstream 326023 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 797614 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 937219 16423733 ~ 16439084 (+)
crb2b LOC108264959 coding downstream 32872 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 233150 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 527568 17905804 ~ 17916639 (+)
polb polb coding downstream 550188 17928424 ~ 17939695 (+)
plat plat coding downstream 709705 18087941 ~ 18118075 (+)
G134344 NA non-coding upstream 20643 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding upstream 45640 17312899 ~ 17330663 (+)
G134303 NA non-coding upstream 142879 17233175 ~ 17233424 (+)
G134301 NA non-coding upstream 165117 17210952 ~ 17211186 (+)
G134245 NA non-coding upstream 356407 17019679 ~ 17019896 (+)
LOC117597787 NA non-coding downstream 8028 17386264 ~ 17398372 (+)
G134466 NA non-coding downstream 232617 17610853 ~ 17611055 (+)
LOC113533142 NA non-coding downstream 321167 17699403 ~ 17714824 (+)
G134516 NA non-coding downstream 358151 17736387 ~ 17736771 (+)
G134521 NA non-coding downstream 360714 17738950 ~ 17739247 (+)
G134341 NA other upstream 79420 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 507535 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 638319 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 754537 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 956794 16402748 ~ 16419509 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 652739 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1057949 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2109251 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2447562 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2802532 20180768 ~ 20185618 (+)

Expression


Co-expression Network