trnae-cuc_20


Basic Information

Item Value
gene id trnae-cuc_20
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 20732400 ~ 20732471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_20
tccctggaggactagtggttaggccacagcactctcactgctgtggcctgggtttgattcccagccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc_20 True 72 tRNA 0.58 1 20732400 20732471

Neighbor

gene id symbol gene type direction distance location
LOC113533338 lrtm1 coding upstream 172204 20547305 ~ 20560196 (+)
wnt5a wnt5a,LOC108411772,LOC107553896,LOC107693599,LOC107750813 coding upstream 264974 20455304 ~ 20467426 (+)
tlr9 LOC108265704 coding upstream 516495 20209756 ~ 20215905 (+)
LOC113533362 apeh coding upstream 523055 20188800 ~ 20209345 (+)
bsna bsn,LOC108265177 coding upstream 561031 20051109 ~ 20171369 (+)
LOC113533337 LOC108265089,LOC108443054,LOC108263931 coding downstream 3789 20736260 ~ 20739234 (+)
actr8 actr8 coding downstream 16508 20748979 ~ 20757581 (+)
chdh chdh coding downstream 36579 20769050 ~ 20784068 (+)
dcp1a dcp1a coding downstream 166005 20898476 ~ 20909749 (+)
tkta tkt,LOC106571977 coding downstream 184352 20916823 ~ 20933688 (+)
G135643 LOC107737118 non-coding upstream 717630 20014522 ~ 20014770 (+)
G135641 NA non-coding upstream 719633 20012567 ~ 20012767 (+)
G135524 NA non-coding upstream 726692 20005119 ~ 20005708 (+)
G135466 NA non-coding upstream 1015421 19716637 ~ 19716979 (+)
G135393 NA non-coding upstream 1027933 19704262 ~ 19704467 (+)
G136057 NA non-coding downstream 204652 20937123 ~ 20939070 (+)
G136056 NA non-coding downstream 214833 20947304 ~ 20965468 (+)
G136429 NA non-coding downstream 614374 21346845 ~ 21347161 (+)
G136433 NA non-coding downstream 628368 21360839 ~ 21361880 (+)
G136466 NA non-coding downstream 942387 21674858 ~ 21693702 (+)
LOC113533440 erc2,LOC108264953 other upstream 290209 20222415 ~ 20442191 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other upstream 546782 20180768 ~ 20185618 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other upstream 830033 19825798 ~ 19902367 (+)
G135287 LOC108265174 other upstream 1229757 19487487 ~ 19502643 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other upstream 2050468 18436185 ~ 18681932 (+)
selenok selenok,selk,LOC107750820,LOC107693600,LOC107594974 other downstream 12109 20744580 ~ 20747856 (+)
LOC113533123 LOC108265628 other downstream 1048752 21781223 ~ 21797808 (+)
LOC113533434 creld1 other downstream 1093211 21825682 ~ 21859668 (+)
LOC113533283 rbsn other downstream 1360124 22092595 ~ 22123751 (+)
LOC113533405 NA other downstream 1775155 22507626 ~ 22509494 (+)

Expression


Co-expression Network