Fish Transcriptome and Expression Database

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economic fish

G173563

Basic Information

Item	Value
gene id	G173563
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047605.1
NCBI id	CM018551.1
chromosome length	26640196
location	250499 ~ 250827 (+)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205486
tctgtctatctatctatctatctgtctatctatctatctatctatcattttaaaccattaacaATAATATATGCAGAAATACATTGTTTTACATCATTACATTGTTTCCTGCTAAAGAAACAACCACAAATGTCCTAGAAACGTCTCTACACCTCTATCCACgtaaaaaaaggcaaatttGGAAAAACCCTCCTGCCTTTGCTAACTGCTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU205486	True	213	lncRNA	0.33	2	250499	250827

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
rras2	rras2,LOC106676223,LOC103139496	coding	upstream	56008	155529 ~ 194491 (+)
copb1	copb1	coding	upstream	109927	119795 ~ 140572 (+)
LOC113536444	cyp2r1,LOC108271345,LOC108429106,LOC107750548,LOC107688167,LOC107585944	coding	upstream	209395	37138 ~ 41104 (+)
slc7a6os	slc7a6os	coding	downstream	392992	643819 ~ 647035 (+)
LOC117598424	NA	coding	downstream	495136	745963 ~ 758953 (+)
dok4	dok4,LOC106587148	coding	downstream	601480	852307 ~ 894448 (+)
dnaaf1	NA	coding	downstream	645320	896147 ~ 908435 (+)
cog4	gfod2,cog4,LOC107741389,LOC107700400,LOC107750533,LOC107674430	coding	downstream	662213	913040 ~ 930102 (+)
G173525	NA	non-coding	upstream	133200	117097 ~ 117299 (+)
G173543	NA	non-coding	downstream	12539	263366 ~ 263913 (+)
G173662	NA	non-coding	downstream	84201	335028 ~ 335754 (+)
G173679	NA	non-coding	downstream	196863	447690 ~ 447950 (+)
G173724	NA	non-coding	downstream	282348	533175 ~ 534931 (+)
G173725	NA	non-coding	downstream	284723	535550 ~ 536301 (+)
G173748	NA	other	downstream	317986	568813 ~ 570326 (+)
G173819	NA	other	downstream	491194	742021 ~ 742710 (+)
ccdc102a	ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045	other	downstream	539547	790374 ~ 822723 (+)
G173898	NA	other	downstream	1110955	1361782 ~ 1364931 (+)
G174536	NA	other	downstream	1808143	2058970 ~ 2060283 (+)

Expression

Co-expression Network