ccdc102a (ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045)


Basic Information

Item Value
gene id ccdc102a
gene name ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 790374 ~ 822723 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205786
ctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgctgtgtgtaaccAGAGCAGGAAGTTGCAGAGATCTCTGGATGAGCAAGTGGAGCAATCAGAGAACCTTCAAGTTCAGCTGGAGCATCTACAGTccagGCTGAGGCGTCAGCAGAACCCGGGTCTGTTTGGGAAGATGAGAACGTCGTCGTCCTCGTCGCGGTTCTGCCCCGATGACCCCGAGCGCCCGGTCAGCGACCCTGAcgaagaggaggaagagctgCAGATTCAAATCCCATGAACACATCCCATAATATCCGAACTGTGACCTTTAACCTGTCCGGCTCATACAGGACACAGGGCAGGTTCTGATGTGGAACCGTGTCTCTGAGACACAGGGACGGTTCCTCTGTGGTTCCTCTGTGGTTCCTCTGTGGTTCCTGTGCAGAAAGCAGCAGAGGAACTGGAGGAGGAAGTGACATCAGCGTCAAACACATTTCACTCGCATCTTCTTCTATTATCGCTTCCACTGAGCTGTGCTCTCTGACCCTAATTCTAGTGCTTTTCCACCGGACAGTACTGCACGCTATGGTACCTGTGAGAGTAGGTGGAGCTTGCGGGGTGGTGACATCATTTCCTGGTGGTAACACTGAACCCAATCAGCAGCGGAGAAACGTCAGGGTCTGATTGGCTTTTATCGTTTGATCTAAAGAGACACGCGTAAATCTCAACCCATTATTGATTATGTTTAGATTATCAGACATGACTGAAGATGGTGTTTGACCAATCAGCACTCTGCACCATCTCTAGCTCCACCCACGCCTCCCTGTTCCCGTACCGTATCGTTCTGTACTGTCCCGGCGTAAAAGCGCTGTAATTACACGCTTCTTCAACTTCCTTTACGACTTTTCTATTCCGCTGTGGCGTTTATATTTCTTCGTACAGAATGCAGTGTCGTGTCGTCGGTTCTCGCTCGGTCGGTTCTGTGTGCCGTGTAAACGTTCTCCAGCTTCACACTCATCTCCAGTGTATttgttttgctctgtgtgtgtgtttctgcgcTTGGACTGTAGGAGAGAGGGGGATTATGGGTACTGAAACgctctgttttggtgttagagTTCTGACACACCTAGCTTACCCGTGGGATTTGGGGCGTGTCCCGAATCGTCGGCAGTGGAAGAGAAAGCaagctctctgattggctgttcagATCAtgaatcatatatatatatattagtccTGATTTTGCATTAATTACAAATTATGAATTGTGAAATTCTTTCCTCTGTAATTTGTGCGTATGCTGTAGTGTCGTTTTCGATCAGCACGTCAGTCTTCTTGCGAAATGTAATCCACTGTGGATGCTGTTGGCTCCGCCCCTTTTTCTGCGAAGAACGAGCTGCGCattctgagtgtgttaagtgCGTAAGAGTTCATCATCTCCGTGTGATCACGTCATAAAATTATGCGAAGTCCACAAAAAGTCTGCCGTGTGACactggtttgttttttaatttaaaaaatcgaATCAGTCTGTCGCCCCCTGCTGGTGACGTTGCCTTCACGTACGTACGTACGGCGTGTTTTTACAGGCGATGTGAGAGATGGTGAGGTGATCAGTACTCGGCCCCGGTCCCTGTTCGGTTCTGTAACGTTGGCTCGGTGTGTCACGGCTCTAACGTCGAGCTGCGGTTCGTCCCGATTTTACTGtttaagcaataaaaacaattcGCCTTCTGGACAAACATCAACAACCAACAATGAGGACCAATACAGACTTACAgacttcttctgttcttcttcttcttcttcagctggACATTTTTACTCGTCGTTCtgacaaatatttatattttttgttacgTAAATTGTTCTGTATTACAGG
>XM_034308879.1
ATGACCCACACGCCCCGCTTTAAGCGTTGGAGGAAGAGGTCGctGCTGTCGCCCGGTCTGGGCTGTGACGGTATCGGTACCGGAGCGGACTGGGAGAGCCGTGAGGAGCTGCGTCTGCGCGAGCTGGAGGAAGCGCGAGCTCGCGCCGCACAGATGGAGAAGACGATGCGCTGGTGGTCAGACTGCACGGCCAACTGGAGGGAGAAATGGAGTAAAGTGCGCGCCGAGAGGAACCGAGCCCGTGACGAGGTCCGGCAGCTCCGCCAGCCCGATGTTGCGCTCACTAAAAGAGCTAGCGAGGCGGAGAGGCAGGACTTTGCACTGCAGGAGCTGGCCTGAAAGCGAAAACAGAAGCAGCTCCAACTCGAGCTTCAGAGACTCCGAGCCGATCAGAGCTGTCCATCAAACGCCACCGTCTCCTCCCCCATATCCAACTCGTCCACCGCCGATTCCGACAGACAGCACAGCCACGAGGACGAGAGCGTCGGAGAGGGACCGGGTTCTCCAGAACCGGAACCCGTCAGAGATGTGGGAACCGACAAACCAGAAAGACAAAAGGAGCTGCAGCTGTTGGAGGCTCTGCTGAGGGCGAAAGCCGACGCTCCGGACTCGTGGGACGCTCGCAGCGTGAGCAGCCTGCGCACGGCTCTGAGCCGCCAGGACCGGAACAGGCTCCTGTGGGAGGATCTGGCAACCCCGGACGAAGACTCCAGCAAGCTCAACGTTCTCCAGCTGCGTCTCGACGAGTCTCAGAAAGTCCTGCTGAAGGAGCGCGAAGATAAACTAGCGCTCAGTAAGAACATTCAGAAGCTGGAGACCGAGCTGAGCCAGTGGAAGCTCAAACACGAGGAACTCAATAAGAGCAAACAGGAAGCTCTCAAACAGctgaaCTTGCTGAAGGAGGTGCATCAGGATGAACTCGGCCGTATGTCTGAGGATCTGGAGGATGAACTCGGAGCTCGGACCAGCATGGACAAGAAACTAGCTGAGCTTCGGGCAGAGaTGGAGCGTCTGCAGGTGGAGAACGCGGCGGAGTGGGGCAGGCGGGAGCGACTGGAGACGGAGAAGCTGGCACTGGAGCGTGACAATAAGAAGCTGCGTGCGCAGATGGAGGACCTGGAGGAGCAGCTGGCACGCAAACGCAGACAGGCAGCCAGCGCGCTGGACACCGACCTCAAGAGCATCCAGAGCGAGCTGTTCGAGAGGAACAAGgagcTAGCAGACCTGCGTCACGTCCACACAAAGGTGAAGAAGCAGTACCAGGAGAAGACGGCGGAGCTAGCTCACGCTAACCGGCGGGTGGAGCAGCACGAAGCGGAGGTGAAGAAGTTGAGGCTGAGGGTGGAGGAGCTGAAGAAGGAGCTGGGTCAAGCCGAGGATGAGGTTAgtgctgtgtgtaaccAGAGCAGGAAGTTGCAGAGATCTCTGGATGAGCAAGTGGAGCAATCAGAGAACCTTCAAGTTCAGCTGGAGCATCTACAGTccagGCTGAGGCGTCAGCAGAACCCGGGTCTGTTTGGGAAGATGAGAACGTCGTCGTCCTCGTCGCGGTTCTGCCCCGATGACCCCGAGCGCCCGGTCAGCGACCCTGAcgaagaggaggaagagctgCAGATTCAAATCCCATGAACACATCCCATAATATCCGAACTGTGACCTTTAACCTGTCCGGCTCATACAGGACACAGGGCAGGTTCTGATGTGGAACCGTGTCTCTGAGACACAGGGACGGTTCCTCTGTGGTTCCTCTGTGGTTCCTCTGTGGTTCCTGTGCAGAAAGCAGCAGAGGAACTGGAGGAGGAAGTGACATCAGCGTCAAACACATTTCACTCGCATCTTCTTCTATTATCGCTTCCACTGAGCTGTGCTCTCTGACCCTAATTCTAGTGCTTTTCCACCGGACAGTACTGCACGCTATGGTACCTGTGAGAGTAGGTGGAGCTTGCGGGGTGGTGACATCATTTCCTGGTGGTAACACTGAACCCAATCAGCAGCGGAGAAACGTCAGGGTCTGATTGGCTTTTATCGTTTGATCTAAAGAGACACGCGTAAATCTCAACCCATTATTGATTATGTTTAGATTATCAGACATGACTGAAGATGGTGTTTGACCAATCAGCACTCTGCACCATCTCTAGCTCCACCCACGCCTCCCTGTTCCCGTACCGTATCGTTCTGTACTGTCCCGGCGTAAAAGCGCTGTAATTACACGCTTCTTCAACTTCCTTTACGACTTTTCTATTCCGCTGTGGCGTTTATATTTCTTCGTACAGAATGCAGTGTCGTGTCGTCGGTTCTCGCTCGGTCGGTTCTGTGTGCCGTGTAAACGTTCTCCAGCTTCACACTCATCTCCAGTGTATttgttttgctctgtgtgtgtgtttctgcgcTTGGACTGTAGGAGAGAGGGGGATTATGGGTACTGAAACgctctgttttggtgttagagTTCTGACACACCTAGCTTACCCGTGGGATTTGGGGCGTGTCCCGAATCGTCGGCAGTGGAAGAGAAAGCaagctctctgattggctgttcagATCAtgaatcatatatatatatattagtccTGATTTTGCATTAATTACAAATTATGAATTGTGAAATTCTTTCCTCTGTAATTTGTGCGTATGCTGTAGTGTCGTTTTCGATCAGCACGTCAGTCTTCTTGCGAAATGTAATCCACTGTGGATGCTGTTGGCTCCGCCCCTTTTTCTGCGAAGAACGAGCTGCGCattctgagtgtgttaagtgCGTAAGAGTTCATCATCTCCGTGTGATCACGTCATAAAATTATGCGAAGTCCACAAAAAGTCTGCCGTGTGACactggtttgttttttaatttaaaaaatcgaATCAGTCTGTCGCCCCCTGCTGGTGACGTTGCCTTCACGTACGTACGTACGGCGTGTTTTTACAGGCGATGTGAGAGATGGTGAGGTGATCAGTACTCGGCCCCGGTCCCTGTTCGGTTCTGTAACGTTGGCTCGGTGTGTCACGGCTCTAACGTCGAGCTGCGGTTCGTCCCGATTTTACTGtttaagcaataaaaacaattcGCCTTCTGGACAAACATCAACAACCAACAATGAGGACCAATACAGACTTACAgacttcttctgttcttcttcttcttcttcagctggACATTTTTACTCGTCGTTCtgacaaatatttatattttttgttacgTAAATTGTTCTGTATTACAGGTTTTTTGTATTTAGCATTATAAATGTTAAGTGTGTATAAA

Function

symbol description
ccdc102a Predicted to enable cytoskeletal motor activity. Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A).

NR:

description
PREDICTED: coiled-coil domain-containing protein 102A

GO: NA

KEGG:

id description
K16759 CCDC102; coiled-coil domain-containing protein 102

RNA

RNA id representative length rna type GC content exon number start site end site
TU205786 False 1903 lncRNA 0.48 2 815913 822683
XM_034308879.1 True 3256 mRNA 0.53 10 790374 822723

Neighbor

gene id symbol gene type direction distance location
LOC117598424 NA coding upstream 31421 745963 ~ 758953 (+)
slc7a6os slc7a6os coding upstream 143339 643819 ~ 647035 (+)
tub tub,LOC107754678,LOC107585948,LOC106562367,LOC106587536 coding upstream 527314 201128 ~ 263060 (+)
rras2 rras2,LOC106676223,LOC103139496 coding upstream 595883 155529 ~ 194491 (+)
copb1 copb1 coding upstream 649802 119795 ~ 140572 (+)
dok4 dok4,LOC106587148 coding downstream 29584 852307 ~ 894448 (+)
dnaaf1 NA coding downstream 73424 896147 ~ 908435 (+)
cog4 gfod2,cog4,LOC107741389,LOC107700400,LOC107750533,LOC107674430 coding downstream 90317 913040 ~ 930102 (+)
cenpt cenpt coding downstream 113621 936344 ~ 948304 (+)
gfod2 gfod2,LOC108444435,LOC107750644,LOC107674467,LOC107741392 coding downstream 127043 949766 ~ 957309 (+)
G173821 NA non-coding upstream 117 762204 ~ 790257 (+)
G173805 NA non-coding upstream 19102 691296 ~ 771272 (+)
G173761 NA non-coding upstream 50867 687350 ~ 739507 (+)
G173769 NA non-coding upstream 176397 613465 ~ 613977 (+)
G173758 NA non-coding upstream 193695 594811 ~ 596679 (+)
G173854 NA non-coding downstream 86916 909639 ~ 910317 (+)
G173865 NA non-coding downstream 201764 1024487 ~ 1025616 (+)
G173880 NA non-coding downstream 311295 1134018 ~ 1134612 (+)
G173893 LOC103139438,LOC106905931 non-coding downstream 554481 1377204 ~ 1432962 (+)
G174018 NA non-coding downstream 795510 1618233 ~ 1618745 (+)
G173819 NA other upstream 47664 742021 ~ 742710 (+)
G173748 NA other upstream 220048 568813 ~ 570326 (+)
G173898 NA other downstream 539059 1361782 ~ 1364931 (+)
G174536 NA other downstream 1236247 2058970 ~ 2060283 (+)
G174546 NA other downstream 1255354 2078077 ~ 2078627 (+)
pth1b NA other downstream 2823020 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 2824632 3647355 ~ 3658290 (+)

Expression


Co-expression Network