G174044


Basic Information

Item Value
gene id G174044
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1685974 ~ 1687078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206032
CTTTCTCTTCTCCATGTTGCGGACCTTCTTCTCGATGATGCTCAGCACTTGCTTCAGGGCCTCGGTGGGAGCTGATACGGGAGCAGCGCccagctctggactggaggactGAACAGCATAGTCACCAGTGGTTGCAGATGGCAtcTTACTTTCAATATTGAAAGAGATGTCAaacctctctgtgtgtttgaacGTTTATTTTTCGAatgttgcttgtttttttatttttttttttttttaaggatattAGCCAGCTAAACACGTTCCAGACCGTCGGCCTGCCCGGCAACTACAAAAATCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206032 True 301 lncRNA 0.46 2 1685974 1687078

Neighbor

gene id symbol gene type direction distance location
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 18712 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 534218 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 554984 1064081 ~ 1130990 (+)
fbxo22 fbxo22 coding upstream 627389 1049267 ~ 1058585 (+)
LOC113536635 tpm1,LOC103040917,LOC107739081 coding upstream 642887 1034560 ~ 1043087 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding downstream 58813 1745891 ~ 1775046 (+)
atxn1l atxn1l coding downstream 351490 2038568 ~ 2043188 (+)
ap1g1 ap1g1,LOC106587331 coding downstream 392262 2079340 ~ 2111029 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 438708 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 497374 2184452 ~ 2224366 (+)
G174026 NA non-coding upstream 36841 1647122 ~ 1649133 (+)
G174023 NA non-coding upstream 56775 1628844 ~ 1629199 (+)
G174018 NA non-coding upstream 67229 1618233 ~ 1618745 (+)
G173893 LOC103139438,LOC106905931 non-coding upstream 253012 1377204 ~ 1432962 (+)
G173880 NA non-coding upstream 551362 1134018 ~ 1134612 (+)
G174402 NA non-coding downstream 78225 1765303 ~ 1765661 (+)
G174437 NA non-coding downstream 215837 1902915 ~ 1904826 (+)
G174474 NA non-coding downstream 218455 1905533 ~ 1908550 (+)
G174484 NA non-coding downstream 247931 1935009 ~ 1935234 (+)
G174477 NA non-coding downstream 249755 1936833 ~ 1941900 (+)
G173898 NA other upstream 321043 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 863251 790374 ~ 822723 (+)
G173819 NA other upstream 943264 742021 ~ 742710 (+)
G173748 NA other upstream 1115648 568813 ~ 570326 (+)
G174536 NA other downstream 371892 2058970 ~ 2060283 (+)
G174546 NA other downstream 390999 2078077 ~ 2078627 (+)
pth1b NA other downstream 1958665 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1960277 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2594166 4281244 ~ 4299367 (+)

Expression


Co-expression Network