G174529


Basic Information

Item Value
gene id G174529
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2043990 ~ 2050979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206579
taaaaaaaagacgtATCGGTCACGTTTACACTGTCCGCAGTATCGCGCTCTACCTGTGCCACGTgtattattgtttgtttgtttgtttgtttgtttgtttttccctaTGTTAGTATTGAGGTTTAAGAAGAATCAGCATTCCAGCATATAAATCTTCGGACTGTTTCATCGTTTCGTCGCGTCCTTGTCGTGGAGGCAGTGTTTGGTGTCGGCCAAAATCTTCaccactgaagaaaaaaaaagaaaagaaagaaagtggtaCAGGTTCTAGCTGCTggaaaaattgattttttttttttttaaaggaaaagatGATTGCTGTGGAATGAAAGCAATAGCTTGACTTATTTTCACCCCtcgtgtaatttttttcttcctgtgatGATACACCAGTCTGTGTGAAGAAcccgctttttttttttttttttttttcttttctgttttctctcaatGCAcgatgttatttttaatttcttacgAATTCTCACCAGCGTGGGTTTCAACCAGGGCATATACGTGACCTTTTGAAACGACACGATCTCTCgatctctcttcttctttttcctctcgTCATGTTATTAGAGATTCCCGCTTCTAAAATCTGAGCACAACCTCTTTTTCTGCGCAGGGCGTTTCGTTCAGTCCTCATCTCCtcgttttttttgttattttttttttcctccccttctTTCCTAGTTGAGATATTTTTGTACAATGTAGGATTTCCTTCTCTGCAATATTAGTCCTGATGACTCTCGTCATTGCACATGGTGGATCAGGGCTGGGCGATGTGACACAAATATCGTATCGTGATACTCTGATACTTTCTTGATaatttctatgatacacaattaaaaaaaaaaatgtatgtaatgtctacaaaaataaatgatccAACAATGAAAGGGAGAAGAAAATTCCGTAAAAGGTGCAAGACACAagtttgttaataaaaataccCTAAAAATCGCATATTGCGATATTTGTGTATCGTGACACAAATATTTATCGCCGTATCGATATCATATCGTCACATCGCCCGGCCCTGTGCTTGATTTTGTAGTTGATTGACACTGACCTTTtttaattggattttttttttttttttttttttgtatgaaggAAAACTTTCAGcagttttgatttttatttatttttatttttttgtgagaaacTGACAGGCGTACTCGACACTGTTTACAGATTAGCCAAGAAGAAATGCTGCAGTTtcatcactgatttttttttttttttttttaggttagtTATTCAacaaatttaaacagaaaatgaaaacgaAGTGCAATTAGATCTGgagttttaaaagaaaacattttaatataaatatgaacatcAGACGGACGGCATTCCAGATCCGAGCCTGACATTCCCGTTTAGCATTtagtaaatctttttttttttttttttccttctttctcagAACAGCCATTTTATCACTTAATCTTAATCCGTATTAGACGTTTTTTCACATTTcgttcacatttttaaaatctagctttacataaaacatgcattttatcATGAGAATGATGCTtttagttttttccccccagtgtAATAAGTCTTTTAAaggaaaggttttttttgaTGGTGAAttgatggatttttttatttttttttcttcgtagATCTCATGTGACCGTTCTACAGGTAGCATTAACTCTCACCACGATATAAATACGTAGACTGACGGGTGGTTTGACCTCATTGACTATATGTGGTTGCTGTGGTGGTCTCGTACGTGTTTCTGGTTTCGAATGATCATTTTTAGAACTGATAACTTGTCGCTTTTTTGCGTAAATATCATTCATGGTCTTATATATTTCACGTTCAGTGGTTTGACAGCTCCACTTCTGTGCTTTTTCGattagggatgcatcgataccgTTTTCCCACCCTATACCGTGTACGAGAAGATTATTTTGGTACTCGTCGATACCGAAACTGACAGAAATGAGTACCATTAATAAGTATTAATCAGTCAGGGACGTCATTTTCTTTAGCTGTTTGTGTGGGTTGCTGCCATGTGATGAGTTTTATGTTGAATTGCACCTTGACTGACAAGCAAGCGAGGGGAAAGTGTCTCAGTGCTTAGTGCTTGCTGAGTGGAACTGCTCGCACATGCGGCAGTTTCTCTGCACACTCGCTACACTGTTCACTCGCGAATATCTTTGTGTAAGCGCAATTCACGGCACGTTTGCGCTCGTTTTGCACTCATGAACCATCTCTGGTTTATCATCATCCATGAAACGTTGTGTTGTCACGTCACGTCGTGTCATCTGTTCGTTAGCGCGACATCGTACACTAGTATCACCCGGTATCAGGTTGATatcagagtatttttttttaacgactCAACGACCGATATCAGTATCCATATCGATGCATCcctttttttcaatattaacTTCTCCGAATAAACTTCCCAGCTTCCTCTTTATCTCCTACCGCTGCCTCAAGTCTTCGTCTGTCCAAAGGGACGTGACCGCTCTGTTACAGCCGGTCTGAACAGACTCTTAAAATCTCATTCCGTTTCTGCAATGtgaccaaaaataaaataaaataaaaaaaattccagacaAACAAATGCAGTACGTTGGCTTTTTAAGGTCATTCCGCTCGGTTAAACAGTAGAGGTTTATTAGACAAGCAATACCCTTAGACAGAGAATTACCTGAACGATGGACGATCTCAGCGCTATGTTCTATGCAGTAAGTGCAAAAATCTAACTCTCGCAGCCGTGAACTCATCGACTCAGCAAAGGAACTGGACGTATTTCTTTTGTATCATGCACAAATTACGTTGTAATGACTCGCCCCAGTCACACTTTAGTTCCCCAACCATCATAGAGAAACTTCTTAAAGGGGAACTCCAccgtttttttgttgttgttttttttttccttatcaACCTGAACTCTGTTCGTTGTATCTGCACTGTGTGATTACAAGAAGACAAGAAACTTCACACATTTCCCCgaacagaaaacctgttaaCGACAATTTGACTTGCAGTGGAATCTAAAGGCAGACGTTGAACCGCAATGAACATTTTAAACGATTTCGCAGTTctaaaatgcaaattcaatcCTCCAGCCATTACACAGGAGCCAGAAAGGCGTTCCTATGAGACTgacatcagagaaaaaaaaaaaatctcaacaaAACTGAATTTCCCAAGTTTCTGACGTTTGAGTAATACAGTTAAAACGTAGTTCTGGTTACTTTACACTTCCCTGAAGCCATACCACATCAGTGCCTCACGACGTTTTACACATAAGCACAAATTCTTCCATCTGAGAAAGTAGTTCTGTCTCTAAAAGGAGCAATTCTACAAGTTTTAGAGTTTTATTTCCAGAGCTGACTGACGAGTCCGACgtctgcccttagacttctagTGTAAGTGAGTTTGGATTAAActgggatcttttttttttccccctcattgaACAGAAATGTACTGAAattctgtataatatataattacacataCGCTACAGATACAATGGATAGATATTgtggtttggggaaaaaaaaaaaagcttccttTTAATCTTGTTGCATTATTAGAATAATTGAGAAGGtcggttattattattttttttttgttagcagtCAGATTATGTTGCTAAAACTTCACAAAACTTGAAGCTTGTTATGTTGCTTGGTTACTGTACAtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttattcgtcACCCTCACTGCTCTGTTATCTCAGACTCCAACGCACTGCCTTACTGACCCCCTGCTAAAGGACGTCAGATTGTGTGTAATGAAACGCTTCAATCCTGTTCACTGtaactgagaaaaaaatcaacGCAATGTCCGTgccttttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgagatccaTCATGCTACACACATGCAGTCGCCACTTTGCTTCGACGAATAAGGGCTGATTTATACGTCATTAAACATTCTCATATGTAGTATAAACGtgaccactagggggcagtgtgGAGAAAacataatgtataaaatgtaaagaaaaggaaagtCGTAGAAAGTAGAAACTGATCGATGCTAACGCGCCAGTTTATTAACACACGCGTCTGGATTTCCCCCAAAGTGTTCATTTTGCCCTTCGTATAAATGCACGTAAAGCCGGGTATAGACTTACGATTTCAGCtctcttttaagattattacgtATCGCACTGTACGAAATCCAAATAAAACCTCgactgaattctataacagactgcgCGAGAATCCGTGTTCTACCATTTCAGGtaatacgatgaagatcctctaatggTAGACCTGCGATTACAGAAAATACGTACGATAATAGTTACGTCATTAATCGATccaggctttaaaaaaaaagggtaacAAGTTTAAGTTTTGTCATCTCCGCtaccgtatttgtagctgtcctcctattggtgggtTGTAGCCGAGCGTCGTTGCAGCGCtcacacactgagattttaatcagaagTTTCTCACGCTGCCAGAACTTTTTTCCGTTCTTTTCTCTGGCGAGCGTCGATCTCAGCTCCAAAGATTTCTTTGTAACGATATGCGGCCAAAATTCGTACAGTGTACAACCGACGCAAGTTCTTACACCATCAGACCTCTTTTCTGCTCGGTTCCTGTTCAGTCGTAGACACGCACAATGCATCTATTTCCAGATCCGCACGTCTGCTTCACTTACCCATAATCCCCCTCTCTTTACGTTAACACGCTTACGCTAATCTTCGCAGAAGTACAAATCAGCCCTTAATCCCAATCCGTCACGGCTGCATGGTTCCCTCTCGTGCTCTCATCTCTTCATCTTCATGGCTTGGACGGTGTGATGTCACTCGTACCTCGCGTCACTCGTGCACACGGTGCACACACAGCGCCCCCTGTAGGAGAAGCGTAATAGCGCACGCTGGCTATTTTTAATGAACAGTACGtttaaaatatatctatataaataaaaacacgaCTCATCACCTACATCATCAAATGAAAGATGCACTTATTCCAGTCCACACTTGGTTACGTAGTAACCTCCTCTAATATTGAATTATATGCGAAACCGTGTTAAAACAATCAACacttgtgtatatgtgtgtgtgtagataaaaGATGAGCTTTCTATATTATCGAGCTTGCCTTAAGATTTGTCGTGGAACGAATGACGCGTACGTGCGGCTCGGAATCGCCCTCTCCGCCGCGAGCCGAAAGCAGGAGCGCGGCCGTCTGCAGGTCGACTGTCCCGcgtaaagaaagtaaaattgTACGGCGTTTCACGTCGAGTTGCGATTTCCGTGAAATAGAGCCATGCACTGCTGACGTGGGCCTTTGACAAGCATTTACCTCAGAAACCTTGTCGCGGTTGGCGTTAGGAAATGAAGCGTTTCGCAGGAATTGCGCCTGTAATCACGGCGCGCGTGTTGCGAAGGTGTGGCACTGACGACTTGCATCAGGTGACCATTTTGTGCTGCATTTTGGGCtctggatagatggatggatagatggatggatggatggatagacgcTCAAATCTTTTCTCAGTCATACTATcacgttgttttttttgtttgtttttttgcctgaCTTCGTTTTTGAGATGCTTTACGACCCGGAATCCGTGTTCACGTTGTGGTTAATTTATCGGTTTTGCGGTAGAAGTGGAACTGAGACTAAAACAGAGCGAGTGAGAAAGTTCTAATggttgaactttttttttttttttccttaaaaacgATTAATTATGTACTTTTAAATTGTACCTTGTTGGCACTAAGTGacactgcttgttttttttttcctttcttctcctttttttttttttcacgtgaCCACATAACcagttttaaaagaaacaagCGTCTTTCTTTAATGCATAAAAGAACCTGCAAAATATATGCAATGATGTGTATGTAATATTCAATCCTCAAGTATAATCCAGGTTATATGGACTTTGTATAGTGAATTTTAATATCGTATGGCCGTACCAATATGTATTAATTCTTCTCAGAAGCCTTAGAAGTCGTCTACCCAAAGTGCTCCCTTAGAACACCCTACACCTACCTGAACTTTACAAAGCATTAATAACTATATTTTGTTGCGTTTTTATTTGTACCCTTTTTTGGAATAAAATAgatttgtactgtatatttgtacCTCTCTGTGAACTACTTAGGGCAGtttttgtttcgttttgtttttcGTTTCGCTGTCTTAATTCTATGTACGGACACAaagatattgtatttttattgttacaGCTAACTTCTTGGAAACATTGCATTTATCATGTTTGTTAAGtaaacacaatataatatatataatattaccaAACTGGCCTGGCTCCTTTTCTGGATTTGTCTCATGTTTTCTCaagttttttgtattatttttaattttgtgttgttttcctGTTGAATTTCGGATAGCTTCATCATCTTGaataggtttatttatttatttttctgagagatttagttttgttttaatattatagtttacttcataaatatttcaaggtttttttttttcctttaaaggtgcaatagtcaatttTCTTGCTTATTATTTATGGTAAATCACCTTGGAAATAtgtagaatgaaaaaaaataagttgAAGCAACAGTATCGTATCAGCACACGTGTATTACGTGCGTAAGGAAACATGTCTGTGTTTTACACcggcctcctgtcagtcattttatagaccaCACCCCCAACGCATTTCACTCCGCCCCCATTTCAGTCTGTTCAGAAAGGAAACCATGGTGGAGTTCATGAAGACTCCATCCATCTCAGTGAGATACTTCTTACTGTCagcaaaaaaacaggaaaacgaACAAATATTGGAGAATAAACATTTCCAAGATGGAGAAGCTTATTGCTAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206579 True 6970 lncRNA 0.39 2 2043990 2050979

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 802 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 268944 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 376728 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 892234 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 913000 1064081 ~ 1130990 (+)
ap1g1 ap1g1,LOC106587331 coding downstream 28361 2079340 ~ 2111029 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 74807 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 133473 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 185479 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 556764 2607743 ~ 2766656 (+)
G174479 NA non-coding upstream 22983 2019817 ~ 2021007 (+)
G174477 NA non-coding upstream 102090 1936833 ~ 1941900 (+)
G174484 NA non-coding upstream 108756 1935009 ~ 1935234 (+)
G174474 NA non-coding upstream 135440 1905533 ~ 1908550 (+)
G174437 NA non-coding upstream 139164 1902915 ~ 1904826 (+)
G174537 NA non-coding downstream 11081 2062060 ~ 2062300 (+)
G174539 NA non-coding downstream 12543 2063522 ~ 2063732 (+)
G174542 NA non-coding downstream 16619 2067598 ~ 2067832 (+)
G174545 NA non-coding downstream 20809 2071788 ~ 2072318 (+)
G174547 NA non-coding downstream 31627 2082606 ~ 2084603 (+)
G173898 NA other upstream 679059 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1221267 790374 ~ 822723 (+)
G173819 NA other upstream 1301280 742021 ~ 742710 (+)
G173748 NA other upstream 1473664 568813 ~ 570326 (+)
G174536 NA other downstream 7991 2058970 ~ 2060283 (+)
G174546 NA other downstream 27098 2078077 ~ 2078627 (+)
pth1b NA other downstream 1594764 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1596376 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2230265 4281244 ~ 4299367 (+)

Expression


Co-expression Network