G174542


Basic Information

Item Value
gene id G174542
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2067598 ~ 2067832 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206593
tccCGTCTCGTTCTGCTGCCACTCTGATGTTATCTCTAcgtctgtgtgtctgtaggcAGATGACGCAGTGTCTGACCGAATCCAGACAAAGAGACAAACTCATCAACGGCAGAAAGGGTCCGAGTCGCACCAGGGCAGAGAGTCTGAGCGAGGGAGAGGAGGGGgttacaaacaaaacacacaaaagagacagagtATGCCAAAACTTTAAACACCGAGCTATGGAGTGGCCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206593 True 235 lncRNA 0.51 1 2067598 2067832

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 24410 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 292552 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 400336 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 915842 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 936608 1064081 ~ 1130990 (+)
ap1g1 ap1g1,LOC106587331 coding downstream 11508 2079340 ~ 2111029 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 57954 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 116620 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 168626 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 539911 2607743 ~ 2766656 (+)
G174539 NA non-coding upstream 3866 2063522 ~ 2063732 (+)
G174537 NA non-coding upstream 5298 2062060 ~ 2062300 (+)
G174529 NA non-coding upstream 16619 2043990 ~ 2050979 (+)
G174479 NA non-coding upstream 46591 2019817 ~ 2021007 (+)
G174477 NA non-coding upstream 125698 1936833 ~ 1941900 (+)
G174545 NA non-coding downstream 3956 2071788 ~ 2072318 (+)
G174547 NA non-coding downstream 14774 2082606 ~ 2084603 (+)
G174548 NA non-coding downstream 19236 2087068 ~ 2089964 (+)
G174531 NA non-coding downstream 46126 2113958 ~ 2114602 (+)
G174556 NA non-coding downstream 112512 2180344 ~ 2182324 (+)
G174536 NA other upstream 7315 2058970 ~ 2060283 (+)
G173898 NA other upstream 702667 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1244875 790374 ~ 822723 (+)
G173819 NA other upstream 1324888 742021 ~ 742710 (+)
G173748 NA other upstream 1497272 568813 ~ 570326 (+)
G174546 NA other downstream 10245 2078077 ~ 2078627 (+)
pth1b NA other downstream 1577911 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1579523 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2213412 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2545574 4613406 ~ 4645198 (+)

Expression


Co-expression Network