G174546


Basic Information

Item Value
gene id G174546
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2078077 ~ 2078627 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206600
TTTACATACAGAAAAGCTAAACGAAAACCATCATTAACacctaaacagaaaaaaacaaggttacagtgggctaaggaaAAGCAATCTTGGACTGTGGATGACTGGATGAAAGTTTTCAGGGATGAATCACGTATCTGCATTGGGCAAGgtgatgatgctggaacttttgtttGGTGCCGTTCCAATGAGATTTATGAAGACAACTGCCTGAAGAAAACATGCAAATTTCCACAGTCATTGATGATATggggttgcatgtcaggtaaaggcaTTGGGGAGATGGCTGTCATTACATCTTCAATAAATGCACAAGTTTACATtgacattttggacactttTCTTATCCCATCAATTGAAAGGATGTTTGGGGATGATGATATCATTTTTCAAGATGATAAAGCATCTTGTCATAGAgcaaaaactgtgaaaacattCCTTGAAGAAAGACACATAAGGTCAATGTCATGGCCTGCAAATAGTCCGGATCTTAATccgattgaaaatctgtggtgGAAGTTGAAGAAAATGATCCATGACAAGGCACCAACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206600 True 551 TUCP 0.39 1 2078077 2078627

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 34889 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 303031 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 410815 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 926321 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 947087 1064081 ~ 1130990 (+)
ap1g1 ap1g1,LOC106587331 coding downstream 713 2079340 ~ 2111029 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 47159 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 105825 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 157831 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 529116 2607743 ~ 2766656 (+)
G174545 NA non-coding upstream 5759 2071788 ~ 2072318 (+)
G174542 NA non-coding upstream 10245 2067598 ~ 2067832 (+)
G174539 NA non-coding upstream 14345 2063522 ~ 2063732 (+)
G174537 NA non-coding upstream 15777 2062060 ~ 2062300 (+)
G174529 NA non-coding upstream 27098 2043990 ~ 2050979 (+)
G174547 NA non-coding downstream 3979 2082606 ~ 2084603 (+)
G174548 NA non-coding downstream 8441 2087068 ~ 2089964 (+)
G174531 NA non-coding downstream 35331 2113958 ~ 2114602 (+)
G174556 NA non-coding downstream 101717 2180344 ~ 2182324 (+)
G174566 NA non-coding downstream 194064 2272691 ~ 2273373 (+)
G174536 NA other upstream 17794 2058970 ~ 2060283 (+)
G173898 NA other upstream 713146 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1255354 790374 ~ 822723 (+)
G173819 NA other upstream 1335367 742021 ~ 742710 (+)
G173748 NA other upstream 1507751 568813 ~ 570326 (+)
pth1b NA other downstream 1567116 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1568728 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2202617 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2534779 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 2577978 4656605 ~ 4661136 (+)

Expression


Co-expression Network