G174547


Basic Information

Item Value
gene id G174547
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2082606 ~ 2084603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206601
CGGCGAGGAGCGAGGTGGTTGTTGAACGACGGCGAGGAGCGAGCGGTTGTTGAACGACGGCGAGGAGCGTTTAGTCATTGAGGAAAATGCTgaccagtgattggtcgttgggaacgatggtgatctgtgattggtaGCCGAGAGAGACGTATTGATTCCAGGACTGTTGCTAACGTCGCTAAGAAGAGgctaaaaaaatcaacaaatttAGCTTCAGGGTTGCTAAGTTGGTGACACTGTTCAGCACTGGTGCATAGTTTAGTTTACAATTTGGTACAATGTGAGCTGGTacgtgtgggcggagctaaaaaTAATTCAGAACTTTGATTGGCTAATCTTCTGCACACAGTCGTCCTGATTGTGTCTTGACTGGAGCTCCTCCATCTACACAAAAATCTTAATTATTAGGTGAGTGCagcattaaaaaattatttttctgacaCTTTTATGAGGCGACGTCatgattttaaacacaaattcaacatttctgattttatttttatttatttttacccatTATCACTGCGTAGCTTCTTAAAATCCTCTTCTAGTTAGGGCAAGAAAGGCGTTAGATTTTCAGTCACAGGAAAATGCACGAGCGCCTGTGAGTGTTTGTACTCAAACTCCTCTGTATTTTTAAGTaggattaaagtattggcacccttagcTATGCACGAATGGATATTTAGTGAAACTTTGCACTTCTTTATCGTCACTAAACATTCATTTTGTTGTTATATTTGAGTTAAAAGTAAACTCGCAAGCTCTCGTGATGAAGAGTTCACTCTGAGACAAACACAGCGCACATTTATTTGAGTTTTGAGCACGGGTAGATTTGTGTGATTGGCACTCGGCCACGATTCGGATACGCCGTTCGATGGAGAAGCTCTAAACTTGGCGACGGGCTTTTGAGACAGCACTCGTGTGATTTTGCATAATCTTTCAAGCTTGCGAAAAGAAAAGTCAGCTTGCTTACTCTGAGGCCGTCAGTATCGCGTATCGGAGCTCTGATGTCAGAAAATAGAGGAATGAATTATGGGAAATTGTTACTTGCTTTGAATCAGTGTCATTTATAAAGCAGGGTCTTGCGTGTGCTGTAAGAAGCCAGCGTTGAGTGCCGCGTTTGCGAATCGCGaatatctgcatgtttttctgcaacagtttttttttcctgcttcttgATCAGAAAGACCTTTGTTACACTAAACCCACAGAAACTCTGAAATGTCAACTCTCCTGTTCCTTGCTCTGAGtgaatttcagaaaaatgtctCAATGAGACACCACGGCGCGAACAAATTTCTGCAATGTGGAACGacacatttctgattaattACCTCTCTCCTGTTGCTATGCTACAAGACGGGGGAAGAAAATATCCTCCCGCTTTCTGATGAATCGGAACACCAGTGAAATTGCTGAGACTATCCCTCAAAAACAAGACGTGTTGGATGAGTCAGGTGTCGTGATGTCACCATGAACAAGGGCGTGGCTTATTTGATGGACAGCTTGTCATAATGCCCATCATCATTGTGCCTATCCTTGCGATACGAGTCGATGAATTCAAGGCTGCGTCCCAAACTGCATAATTAGCGAGTATTAAGTGCTACATAGAATGCCTAAATACGAGCTATTTCATTTAGTTAGCACGCTAACTCCAGCTGTTTATCAAAAATAcagtgaagcaaaaaaaaaaaaaaatcatttctggTTGCTTccgatgtgtgtgtttttattaccGGTTTTGTGATTCACCATTTTCTCAAAAACCTGAGAGAAATTCACAAACACTTCCCTTTAGTGTCTAGCTAACAATTTTACAACTAGTTAATGATGCAAATTCCACAAAGTGAATAAATCACCTGACATCATTCACAAACTTATCGCTTCATGCCTTACCTGttcaccaagaaaaaaaaacaaaaaacttatcattatttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206601 True 1941 lncRNA 0.41 2 2082606 2084603

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 39418 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 307560 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 415344 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 930850 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 951616 1064081 ~ 1130990 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 41183 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 99849 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 151855 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 523140 2607743 ~ 2766656 (+)
LOC113536638 pmfbp1 coding downstream 714792 2799395 ~ 2971692 (+)
G174545 NA non-coding upstream 10288 2071788 ~ 2072318 (+)
G174542 NA non-coding upstream 14774 2067598 ~ 2067832 (+)
G174539 NA non-coding upstream 18874 2063522 ~ 2063732 (+)
G174537 NA non-coding upstream 20306 2062060 ~ 2062300 (+)
G174529 NA non-coding upstream 31627 2043990 ~ 2050979 (+)
G174548 NA non-coding downstream 2465 2087068 ~ 2089964 (+)
G174531 NA non-coding downstream 29355 2113958 ~ 2114602 (+)
G174556 NA non-coding downstream 95741 2180344 ~ 2182324 (+)
G174566 NA non-coding downstream 188088 2272691 ~ 2273373 (+)
G174568 NA non-coding downstream 192108 2276711 ~ 2276922 (+)
G174546 NA other upstream 3979 2078077 ~ 2078627 (+)
G174536 NA other upstream 22323 2058970 ~ 2060283 (+)
G173898 NA other upstream 717675 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1259883 790374 ~ 822723 (+)
G173819 NA other upstream 1339896 742021 ~ 742710 (+)
pth1b NA other downstream 1561140 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1562752 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2196641 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2528803 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 2572002 4656605 ~ 4661136 (+)

Expression


Co-expression Network