G174548


Basic Information

Item Value
gene id G174548
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2087068 ~ 2089964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206602
TTTAtgtctgtaaataaaacacttcaaagtTGTAATGTTTTGGGCTTCCGAGTGGCGCGACAGAAAGTTTGAATCCCAAAAacgccacagccatctgtgctTGTTTATCCATGCTTTCTGTGTAGGAgtggcattctctctctctctctctctctctctctatcaatcactagccaatcgtgggcgtctgtgagctcatgtatgcagaagagggcggatagcgctttactatgagcagcagttctgaaaAAAGATGAGGTTAGCTGAATTCACATGCCTCAAAGGATGCACGTGTCAGCCTTCATTTTCTCTGATTGGTAGCTGAAGGGAGACCTGACTGATGCCGAAGActaaattaagaaaaattggaaaaaaaaaaaaaaaaagtttttgtagtGTCGCTTCATGTTACTTTTAAAGTAGCTCCATAGACGGTCTGTTTTAGTTTGCTATTTAGACAGGAGAgaggataaataaaatgaaaaatctatatAAATCTTTGAAAATTCCTCCCTTTCTGAGTGAAAGTGTCTAACTCGAACTCTATAGCTAGTTTCTGGACCAATGAGcttccttcagctaaataatttacataaatacgATTGCGATGTCAATCGGAGAAGCCGCGATAGACAGCTACAGCTATGTATACGTATTTCATCGTAGAACATCAATTCATGAACCCGGTCTCATGGTGTATCACGAATTGTTTCATCACTTGATTTGTTCATTAAACATCTCCGTCCATGTTCTCCTCCATCGTCTGAGCGTTAATGATCACAGGATAACGTTTAAAAACTTCGGTTCTGGTTTTCTTTCCGTGTTTGCGGTGCGATTGAGACGGATGAGGAATGAAATGTGTCGCCCTCGACCTTCTAACAGAATTCATTACTcctttttctacattttctctGTGAAGGCGAAGATGTCTCAGCACGCTGGATGATGGGTGATCTGCGAAGTACAGGAAAGCTGCCGATTTGCATCAAAGCGAGTTTTCTTTTGCAGCATCCATTTAACGATGctcttttcagctgtttttgcTGAGAGGCAGCACGATGCTGGAAATGTCTTTGTTCAGCAAGTAATCACAGTAGTTTCCTTCTCTGGCTGTAGCAGCTTAATTAGGTGCTGTGTGCTTGCAGAAAGAGCAGCGTTTATCTGTGACGGCAAGCCGTAAAAAGCTCATGTGGACGTAGGCTGGAGGAATAAACTTCTGGGATGGTTTTTTTGGCATCGTATCCACAGTCTGATGGTGTGACCCTCTTAATTAATGCGCATTTTCTGCCCCCGGTCCTTTGGTGTAATAAACAACAGTCTCTAGGCTCGTGAGATTCTTAGCCTGAATCTCGTCATCCGTTCTGCTCGGGGTCTCTTCAGGTTAAAATCCActggaaacatttttaaatgcttaaaaaaaccctttataatttttaaaaaaagccaacaTTTACCAAGTACAATTCAACAATATTTAACgcctgtatataaaaatataaaacgcCTATTATGTGCCTGATGAGAACGCTGTGGGGGCGTGTCGGATCACGATGATTGACAGTGATCTCCATGGCAACTTGCCAACAGTTGCTAGCGATAGAAATGATGATGATTCACGGCGAGTTTGAGTAAAGGTTGTAACTCGGAATTTCAAAATTCAGgctaggaaaaaacaacaaaacaaaacaaacaaaaaaactccaACATGGAATTCCTTGTCGGAAAACCAGGACGATATTCCCAACTCCGAGTTCAGCATGTGACATCATGTCGGAATGGCCAACCAGACCGTCAAcggtaaataaaacacaaaatcgTATCGCGACTTTTAAtcagtttgtttaaatttataaaacacTGACCATATGGTTGGGtttgagaaaataaatacatcataaatttACGAATTATTAATTTTAGCTAGTTACCTCGTTACTAACGATATTCAAGCTTTCTTAGATGTTTTTCCCCACGTTGTAGCTCATAAGCGCACAAAGCTCAAAACCGACGTAATTCCGAGTTAAGTCGAATGCAGCGTAAGGGCTGATTGAGGTTTGTGCGAGCTTGATGGCTGCTTCTCTAATTCCAGCTAGTTTATAGCTACGCTCATTACGACCGTGAAGGAGAAAAACACGGAAATGGCTGATCTGggcagaaataaaataacaaaggaGCACCTTTTTGAGGATATTTTGGTGTCTTGTGAAAAGAATAACAAAAGTCTAAAGGCAGCTCCATCAGTTTACGGTTTTATAATGAATTACTCAGTTCCTGTAATCGAAGCTCTCGAGCTGTATAACTCggaagtatttatatttatgcattaaCACACTCCGATGGCGTATGGATACCACACAAAGTGTTAAgtagccggaactactttccaATAAAAGTACAAGTTTAATAAAAGTCTGTAAAAACATCTCGGGTCAGAATTTCTTTCTCACCCCTTCACCTTTATTAGTAGTTATTCAGCCTTAGTTTTAGATGTCCGTTATACGCGAGTTTGTCGTAAACGCGTGTTCTGTTTGTTCTGATTCTTGTCTTGACCCAGATGTTGTGAATAGAGATGAGACTGGAGTGTTGTGGAGTTGAATAAACAGCGATTCGCTGTTTAAAGACGACTCTGAAACTGTGAAGTAGGAGCTAAACGCATGACGCGCCTCATCTGCGAGCCATTTCCTCTGAGTCAGCGCCGCGTCGTACACGTTTGTGATGCAGTTATATAACGTGAGCTCAAATACGCTGATTCTCGGCATGTTTTCTTCGAGGTTGTTTAACATCCTCTCCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206602 True 2792 lncRNA 0.41 3 2087068 2089964

Neighbor

gene id symbol gene type direction distance location
atxn1l atxn1l coding upstream 43880 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 312022 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 419806 1658132 ~ 1667262 (+)
exosc6 exosc6 coding upstream 935312 1150781 ~ 1151756 (+)
herc1 herc1,LOC107741401 coding upstream 956078 1064081 ~ 1130990 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding downstream 35822 2125786 ~ 2173008 (+)
usp10 usp10 coding downstream 94488 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 146494 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 517779 2607743 ~ 2766656 (+)
LOC113536638 pmfbp1 coding downstream 709431 2799395 ~ 2971692 (+)
G174547 NA non-coding upstream 2465 2082606 ~ 2084603 (+)
G174545 NA non-coding upstream 14750 2071788 ~ 2072318 (+)
G174542 NA non-coding upstream 19236 2067598 ~ 2067832 (+)
G174539 NA non-coding upstream 23336 2063522 ~ 2063732 (+)
G174537 NA non-coding upstream 24768 2062060 ~ 2062300 (+)
G174531 NA non-coding downstream 23994 2113958 ~ 2114602 (+)
G174556 NA non-coding downstream 90380 2180344 ~ 2182324 (+)
G174566 NA non-coding downstream 182727 2272691 ~ 2273373 (+)
G174568 NA non-coding downstream 186747 2276711 ~ 2276922 (+)
G174572 NA non-coding downstream 211668 2301632 ~ 2357372 (+)
G174546 NA other upstream 8441 2078077 ~ 2078627 (+)
G174536 NA other upstream 26785 2058970 ~ 2060283 (+)
G173898 NA other upstream 722137 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1264345 790374 ~ 822723 (+)
G173819 NA other upstream 1344358 742021 ~ 742710 (+)
pth1b NA other downstream 1555779 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1557391 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2191280 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2523442 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 2566641 4656605 ~ 4661136 (+)

Expression


Co-expression Network