G174556


Basic Information

Item Value
gene id G174556
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 2180344 ~ 2182324 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206610
ctgACAGTTGAAATTCTTTTGCTGCCTCAGGTGAATACTTTTAGCACctagttttacagtaaatttaacattactgttattaattattGCAATATAATCACAGCAGTGTTACCGCAGCTAAACAATAATGTGCTTTGATACAGTATCATCTGCTAAAACTGTACATATTTTCCAGGATTCCTCATTCTGTGGTACAGAagtgtaaaacacatttaaagtatTACACTGTGTAAAATGCTTTACtgcagaaatgacagaaacTGACTCACCTCTGGATGTGACAATATACTTTAGGTTGTAAAGAGCTTCTTCATTTGTTGAGTCATAAGGTGTATATACTTCCTGATCAGGTTCTCTGTAGTTCCTTGTTCTGTCTTCGTAACGATGACCCGTGCTCCTGTCCTCCCTGTACGACTcatttcctctgtctctcctgtagtctctgtctctcttgtagtctctgtctctcctgtagtctctgtctcgctctctccttTCAGGCTCGGGATAGTTCTGGTTCCTCATCTCTGGCATtgccacgcacacacacacacacacacccacccacacacacacacacacacacacagaagactTCTGACTACTCCACtggatttatttaataattcttCTTGTTTTGCTTATCGATTTGTTTCACATTGAGCTTCCAC

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206610 True 671 lncRNA 0.40 3 2180344 2182324

Neighbor

gene id symbol gene type direction distance location
phlpp2 phlpp2,LOC107659136,LOC106587330 coding upstream 7336 2125786 ~ 2173008 (+)
ap1g1 ap1g1,LOC106587331 coding upstream 69315 2079340 ~ 2111029 (+)
atxn1l atxn1l coding upstream 137156 2038568 ~ 2043188 (+)
alx4a alx4,alx4a,LOC107593440,LOC107683603,LOC107754690,LOC107688160,LOC107750553,LOC106587508 coding upstream 405298 1745891 ~ 1775046 (+)
nucb2a nucb2,LOC107688161,LOC107585938,LOC107750551 coding upstream 513082 1658132 ~ 1667262 (+)
usp10 usp10 coding downstream 2128 2184452 ~ 2224366 (+)
crispld2 crispld2 coding downstream 54134 2236458 ~ 2265755 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding downstream 425419 2607743 ~ 2766656 (+)
LOC113536638 pmfbp1 coding downstream 617071 2799395 ~ 2971692 (+)
psmd7 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 1044324 3226648 ~ 3233940 (+)
G174531 NA non-coding upstream 65742 2113958 ~ 2114602 (+)
G174548 NA non-coding upstream 90380 2087068 ~ 2089964 (+)
G174547 NA non-coding upstream 95741 2082606 ~ 2084603 (+)
G174545 NA non-coding upstream 108026 2071788 ~ 2072318 (+)
G174542 NA non-coding upstream 112512 2067598 ~ 2067832 (+)
G174566 NA non-coding downstream 90367 2272691 ~ 2273373 (+)
G174568 NA non-coding downstream 94387 2276711 ~ 2276922 (+)
G174572 NA non-coding downstream 119308 2301632 ~ 2357372 (+)
LOC113536721 NA non-coding downstream 133462 2315786 ~ 2328542 (+)
G174728 NA non-coding downstream 212673 2394997 ~ 2395360 (+)
G174546 NA other upstream 101717 2078077 ~ 2078627 (+)
G174536 NA other upstream 120061 2058970 ~ 2060283 (+)
G173898 NA other upstream 815413 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 1357621 790374 ~ 822723 (+)
G173819 NA other upstream 1437634 742021 ~ 742710 (+)
pth1b NA other downstream 1463419 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 1465031 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 2098920 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 2431082 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 2474281 4656605 ~ 4661136 (+)

Expression


Co-expression Network