G175287


Basic Information

Item Value
gene id G175287
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 3219008 ~ 3219340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU207410
aaaaaaacaaaaaagttaccTTTGGAGTAAAGAGACTTGGGGGAAGTGAGGTCGATATCCGTGCCGAACAGTGAAATGAAGTCAGAGGGCATCTCAGTGCCTCTCTGGGCCGGGGAAGAGAGCTCTCTCTGGGTTCTAGTGAGAAGCAAAAAGTTACGAGTAGCAAAAGTTTAATCTTTTCGCTCATTCATAAAAGTGGCGTGTCGTCAGCTCTCCGAGTTTAGCAGACTGAAGAGTGTGAGGCGAGTTTGT
>TU207412
aaaaaaacaaaaaagttaccTTTGGAGTAAAGAGACTTGGGGGAAGTGAGGTCGATATCCGTGCCGAACAGTGAAATGAAGTCAGAGGGCATCTCAGTGCCTCTCTGGGCCGGGGAAGAGAGCTCTCTCTGGGTTCTAGTGAGAAGCAAAAAGTTACGAGTAGCAAAAGTTTAATCTTTTCGCTCATTCATAAAAGTGGCGTGTCGTCAGCTCTCCGAGTTTAGCAGACTGAAGAGTGTGAGGCGAGTTTGTCTCGTGCAGCCCCTCCCACCTGACACACGCGCGTCGCCGAGGAGAAGCGCGCACACGCGCCCTGTGTCAGGTGGGAGGGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207410 False 252 lncRNA 0.46 1 3219008 3219259
TU207412 True 333 lncRNA 0.53 1 3219008 3219340

Neighbor

gene id symbol gene type direction distance location
LOC113536638 pmfbp1 coding upstream 247316 2799395 ~ 2971692 (+)
zfhx3 zfhx3,LOC107738341,LOC107679901,LOC107715462,LOC107553004 coding upstream 452352 2607743 ~ 2766656 (+)
crispld2 crispld2 coding upstream 953253 2236458 ~ 2265755 (+)
usp10 usp10 coding upstream 994642 2184452 ~ 2224366 (+)
phlpp2 phlpp2,LOC107659136,LOC106587330 coding upstream 1046000 2125786 ~ 2173008 (+)
psmd7 psmd7,LOC107584693,LOC107659147,LOC107553010 coding downstream 7308 3226648 ~ 3233940 (+)
znf143a LOC108271103 coding downstream 34816 3254156 ~ 3263298 (+)
LOC113536476 LOC108271228 coding downstream 63770 3283110 ~ 3352779 (+)
LOC113536513 LOC108271259,LOC108411663,LOC107558370,LOC107552396,LOC107597482,LOC107657963,LOC107713003,LOC107746258 coding downstream 345774 3565114 ~ 3572263 (+)
dkk3a LOC108270596 coding downstream 693444 3912784 ~ 3922969 (+)
G175284 NA non-coding upstream 6097 3212495 ~ 3212911 (+)
G175256 NA non-coding upstream 20488 3164243 ~ 3198520 (+)
G175263 LOC108271072,LOC108433040 non-coding upstream 38454 3178782 ~ 3180554 (+)
G175241 NA non-coding upstream 81844 3135052 ~ 3137164 (+)
G174877 NA non-coding upstream 214654 2918458 ~ 3004354 (+)
G175291 LOC108271305 non-coding downstream 18544 3237884 ~ 3238214 (+)
G175370 NA non-coding downstream 166850 3386190 ~ 3386375 (+)
LOC117598422 NA non-coding downstream 212989 3432329 ~ 3434701 (+)
G175389 NA non-coding downstream 228602 3447942 ~ 3452820 (+)
G175493 NA non-coding downstream 360638 3579978 ~ 3581939 (+)
G174546 NA other upstream 1140381 2078077 ~ 2078627 (+)
G174536 NA other upstream 1158725 2058970 ~ 2060283 (+)
G173898 NA other upstream 1854077 1361782 ~ 1364931 (+)
ccdc102a ccdc102a,LOC106587147,LOC107594240,LOC102775569,LOC107081377,LOC103376291,LOC106562045 other upstream 2396285 790374 ~ 822723 (+)
G173819 NA other upstream 2476298 742021 ~ 742710 (+)
pth1b NA other downstream 426403 3645743 ~ 3647115 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other downstream 428015 3647355 ~ 3658290 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other downstream 1061904 4281244 ~ 4299367 (+)
ano1a ano1 other downstream 1394066 4613406 ~ 4645198 (+)
G175977 pacsin3 other downstream 1437265 4656605 ~ 4661136 (+)

Expression


Co-expression Network