G175977 (pacsin3)


Basic Information

Item Value
gene id G175977
gene name pacsin3
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4656605 ~ 4661136 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208265
ATTAACCAGctcatctgtgtttatttggaTTGTATACACTGATTAGTATAGGCTGATACAGTAGTTGAAGGTTTACAGTTATGTGTCAGTCATAGATGTGGAAACCAGAATAATTCTTATATCTTCTGACACTCACACAGTCTGTACAGACAAGCAAACACagatatgcacacacaaacacatgcgcTGCTCAGATAACCTCAACTAAGTCATTGGTCTGAgtctttaatgttttaattaaaaacagaaaatgaaattaaaaacataactaAAAGAACTGTTCCATTTAAGCATCCTCCGcttcaaaaatataaattccTTTAGGACATGTCAGAATTAACTGGTCTTATAGAGCCCATTTTGATCCTTAAATTTCTTGCATTGTACAAATCCAGATTATTCTACAAAACTAAGTGTTCACGCTTAAAAGAAAGATTAGAAAACTGCCAATGCTTTCAGGAATCCTACAGCGATTTATAGCTATGTGCAGCAAGAGTTCAGCCTAGTTGTCCTCAAGTACTaaacctgttaaagaaaaaaaatgtacacgGCAACATACATTTGTGAGAAAAACACAGTCAACTTGATCTGGTTGAAATAAATACTTGAAGTGATTTCTGATATATCTGAAATTCACAAGTACAAGACAGAAGTATCAGAGTAAACCGATCTCCCGCAACCTCCGACAGTGTAGATGCAGCCCCAtgaaaagaatatatatttatccCTTTAGAAATGCAAAAAGTCTGTATTGAGCATGGTGAGTGTGATGACGGTACTGTAACTCTTCAGCTCTGCTTTATTTCTGTCCTTTGAATCTTCCAGAAAAGGCACTGTACCTGTAAAGTCTCTCACAAAGCCATGGGTTAGGCCGTGGCACCATGATCCTAAATTCTCTATTCTGTCAACAAAGTATACAAGATGTGAGCTTTTTTCTGTGGTTCCTGTGTAAATGTAGCGATGGCTTGGCAGGGCCTCCATAGCGTCAGACAGGCCCCGCTGGCACAGTTCAGTGTGATCAGTTCAGTGATGGTATGGCCTTCTCAAGGAAGGTGGTGGGTCTTGGTGGGACATCAAGAGCCAATGACCTGGACGTAGTTAGCAGGGTAGAGGCCCACCTCACCGCTTTCCAGCTGACCTTTGCACCAGCCCTGCTCATCCTCCTCTCCCAACTTCATCAACTCTTCACCTGCTTTAAAGCTCAGCTCATCAGATTCTTGGCCAGTGTAATCATACAGTGCTCTAACACGCACACCCACtaccttctcctcctcctcttcaagCTCAACTCCATTCGCTGCTATGTACTTCTTAGGGCTCTCTTCATCAGACCAATCTGAGGAGTAGTCTTTGGCAGCACTGTGTTACCCAGGAGACAAAACAGAGGTTACAGATGTGACATTTTAATCCTTATGATCCTCAAAATACATGTTTCTTTTGGATATACTGTTCTtaacaacagaaacaaatgaCTAAATGGTGAtca

Function

symbol description
pacsin3 Predicted to enable phospholipid binding activity. Acts upstream of or within notochord cell differentiation and notochord formation. Located in plasma membrane. Is expressed in several structures, including endoderm; epidermis; intestinal bulb primordium; sensory system; and ventricular zone. Orthologous to human PACSIN3 (protein kinase C and casein kinase substrate in neurons 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208265 True 1486 TUCP 0.41 2 4656605 4661136

Neighbor

gene id symbol gene type direction distance location
fadd NA coding upstream 5513 4647397 ~ 4651092 (+)
ccnd1 ccnd1,LOC107686820,LOC107584710,LOC107730086,LOC107727103,LOC107679730 coding upstream 165230 4486552 ~ 4491375 (+)
tpcn2 tpcn2,LOC107584739 coding upstream 333916 4302271 ~ 4322689 (+)
mmp15b mmp15,LOC108271068,LOC107584709,LOC107686817,LOC107679737,LOC107562795 coding upstream 427641 4206958 ~ 4228964 (+)
LOC113536728 NA coding upstream 510934 4142637 ~ 4145671 (+)
csnk1g1 csnk1g1,LOC108271196,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding downstream 31397 4692533 ~ 4725750 (+)
rps17 rps17,LOC108271026,LOC100699764 coding downstream 69363 4730499 ~ 4736404 (+)
senp8 senp8,LOC107686835,LOC107594499,LOC107738916,LOC107730148 coding downstream 372103 5033239 ~ 5035405 (+)
rxfp3.3a2 LOC108270660 coding downstream 646885 5308021 ~ 5310159 (+)
drd4b drd4b,LOC108270559,LOC108412785 coding downstream 653331 5314467 ~ 5355290 (+)
LOC117598446 NA non-coding upstream 72774 4578357 ~ 4583831 (+)
G175939 NA non-coding upstream 81684 4574451 ~ 4574921 (+)
G175905 NA non-coding upstream 146904 4509416 ~ 4509701 (+)
G175894 NA non-coding upstream 270611 4385785 ~ 4385994 (+)
G175843 NA non-coding upstream 287795 4368607 ~ 4368810 (+)
G175988 NA non-coding downstream 33783 4694919 ~ 4729047 (+)
G175991 NA non-coding downstream 76115 4737251 ~ 4739666 (+)
G175999 NA non-coding downstream 126606 4787742 ~ 4860943 (+)
G176008 NA non-coding downstream 152376 4813512 ~ 4838371 (+)
G176041 NA non-coding downstream 232006 4893142 ~ 4893357 (+)
ano1a ano1 other upstream 11407 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 357238 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 998315 3647355 ~ 3658290 (+)
pth1b NA other upstream 1009490 3645743 ~ 3647115 (+)
G174546 NA other upstream 2577978 2078077 ~ 2078627 (+)
LOC113536390 LOC108271079 other downstream 2461249 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 2606695 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 3582219 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 3583816 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 3586880 8248016 ~ 8248088 (+)

Expression


Co-expression Network