G176056 (myo9a)


Basic Information

Item Value
gene id G176056
gene name myo9a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 4912078 ~ 4960526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208359
CATTAATGTAGATTACAttcatacataaaaaaaaaatgtatgcataaATTCTATATATTCTTGTTTAAGTACATTGTAACTAacactgctactactattactaataaataaaatgtaaaataatttttaaaggaCTGAATAATAAATTCACGGTGACTGTAAAAAAGTACACCTCTCAGATATCTTTTACAGCTTTCGTTTTAATGAGCTGGGAAAAACCACTGACATCATTTTCTGGTGTAGTAAGAAACAGTTCTTTAAATGcactttatatacacacacacacacacacacacacacacacacacacacacatacacacaagcacacacacacctgcataaCAGAACCAGAACCCAGTGCTGAGGCAGGACTGTGCACTGCACTCAGTGCGACCCACAGCGAGAGATCAGAAGTTCAAACACTGTATGAGATAATACGCTTTAACACAATGGGATGTTTTTCacctgtgtgtaaatgtgaaaaacagaCTTTCTTCAGTAAACAGCATGTGGGCCTTTTGCCTGAATACCACAATGTCATATACCAAACCGCTGGAAATGTTCAGGTAggtgaggaaaataaaaaaaaaaaaaaaaaacaaagaacagtgAGCAGAGCTGTTTCTCTGCCAGTGGGGTTTAGCAGACAACGCCTTCGATTGCATGGACTTACTCCAATCGAGTTGTGTGTCATGTTAATAATATGATAGTTACACGGTAACAGATTGTAATCAGAATTTTACAGCTGGCATTTGATAAAGACAGCAGATTCTTCGAGGACAATACTGCAATACTGCAAATATAATCAAAATCTGTAACATTGGTGTGCATCACATACTGGGGTGAGCATAAGTTTGTCTTCATATAGGGGACTAAACAGTGTGGGTTAATGAgagagaacagtgtgtgtgtgtgtgtgtgtgtgagtactgGCCGGCTTCGGCAAACGCTGCACAGGCAACTTTAGTAACATGATCAGTGATTTGAGCAAACAGTCACATGCTGTCTGTGTACTAAATGCTTTAGTCAACAATCAGATGACGCGGAtgtaaaaaggaaaacagaggGACAACAGAACGGATGGATGGCTGTTAGGAGGTTACTGATACAGTAGGCTGTGAGTTTTAAACAGTCTTCATCCAGCCAGGATCCTCTGGCTTTAAAACACTAGCAGACTTGGTCCCTTCGTAGCCGAGATTCCCAtccaatcaaaaacaaaaagcagcgAAAAACTTCAAAAATGTCAAAGTGGTtttcacataatcatccacacacacacacacacagccgctGTCCCACGTTACTTTCCCAAGTGTTCATAACAGGCAGAAAGATAAATATAAGGATTTAACAACCCAGAAAATCACTGGTGTTCCAgctttgtacattttatatcacacaatatatttatagagagatttatatatatatttatatataccatgtaattaaaatttattaaataggCCGGGGAGtgaaatacatacacataattATAGAGCACGCTGCTTAACATGGTTATAAAGTGTAAACTTCAAAAGCAGCCAATGGTTTAGCTTGAGTTCATGGAGTCTGCACTATGAATGGCCTTGTCTCCTGGCTGAGGAAAGCCGCCTGCAGCCgagcaaacttttttttccacccatcACATTATCTTTCCCCGTCCTCCTTCTGACTGTGTTCATCTCTAATCTGTGactcaaaaacagaaaagatcaGTCTGGGATCGGACCCTTTTTGCCAGCTGAGTTTCTCCAACACGCTTCTTCTGCCTCTTTATGTCCATGGCACTTAGGGGCTGTTCTGGTGGCGCCGAGGAGGTAGCCTGGGGAGCTGAGGAATGAGCTAATAAGGGAAGACAAGCAGCTTCTTCACACCATGAACTCATTGGTGCCGTATAACACTAGCTGCTGTGCCTGAAGGTCCGGGTCTCTGTTGTGCCCCTGGTCCTCTGGGGGTCTCTGGGGAGAGTACTTGGCATTGCGCAGCTTCTGCTTGCTTTTCTCAGGATTGAAGGTGCCTCGGCTGCTGTAGTGGAGCCTCTCATCGCCGTCCTGCTCGGCTGTGTCCTGGCTGGACGGAGGCAATTTGGATCGGAGCCGGAAGCGGCGGGACGGAGCAGAAGGCTGCGGGCAGGATGAGGAGACGGAGGACACGGTGGAGCTGGAATCCACAGAGTCGAGCGAGTCAGGTTGTCTCTGTAGTGTCCGCCTGCTTTTCCCCTGGGATTTCTTGGGCCGAGTGGCAGCTGACGTGGGGCCTTT
>TU208360
aaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccaaagaacagtgAGCAGAGCTGTTTCTCTGCCAGTGGGGTTTAGCAGACAACGCCTTCGATTGCATGGACTTACTCCAATCGAGTTGTGTGTCATGTTAATAATATGATAGTTACACGGTAACAGATTGTAATCAGAATTTTACAGCTGGCATTTGATAAAGACAGCAGATTCTTCGAGGACAATACTGCAATACTGCAAATATAATCAAAATCTGTAACATTGGTGTGCATCACATACTGGGGTGAGCATAAGTTTGTCTTCATATAGGGGACTAAACAGTGTGGGTTAATGAgagagaacagtgtgtgtgtgtgtgtgtgtgtgagtactgGCCGGCTTCGGCAAACGCTGCACAGGCAACTTTAGTAACATGATCAGTGATTTGAGCAAACAGTCACATGCTGTCTGTGTACTAAATGCTTTAGTCAACAATCAGATGACGCGGAtgtaaaaaggaaaacagaggGACAACAGAACGGATGGATGGCTGTTAGGAGGTTACTGATACAGTAGGCTGTGAGTTTTAAACAGTCTTCATCCAGCCAGGATCCTCTGGCTTTAAAACACTAGCAGACTTGGTCCCTTCGTAGCCGAGATTCCCAtccaatcaaaaacaaaaagcagcgAAAAACTTCAAAAATGTCAAAGTGGTtttcacataatcatccacacacacacacacacagccgctGTCCCACGTTACTTTCCCAAGTGTTCATAACAGGCAGAAAGATAAATATAAGGATTTAACAACCCAGAAAATCACTGGTGTTCCAgctttgtacattttatatcacacaatatatttatagagagatttatatatatatttatatataccatgtaattaaaatttattaaataggCCGGGGAGtgaaatacatacacataattATAGAGCACGCTGCTTAACATGGTTATAAAGTGTAAACTTCAAAAGCAGCCAATGGTTTAGCTTGAGTTCATGGAGTCTGCACTATGAATGGCCTTGTCTCCTGGCTGAGGAAAGCCGCCTGCAGCCgagcaaacttttttttccacccatcACATTATCTTTCCCCGTCCTCCTTCTGACTGTGTTCATCTCTAATCTGTGactcaaaaacagaaaagatcaGTCTGGGATCGGACCCTTTTTGCCAGCTGAGTTTCTCCAACACGCTTCTTCTGCCTCTTTATGTCCATGGCACTTAGGGGCTGTTCTGGTGGCGCCGAGGAGGTAGCCTGGGGAGCTGAGGAATGAGCTAATAAGGGAAGACAAGCAGCTTCTTCACACCATGAACTCATTGGTGCCGTATAACACTAGCTGCTGTGCCTGAAGGTCCGGGTCTCTGTTGTGCCCCTGGTCCTCTGGGGGTCTCTGGGGAGAGTACTTGGCATTGCGCAGCTTCTGCTTGCTTTTCTCAGGATTGAAGGTGCCTCGGCTGCTGTAGTGGAGCCTCTCATCGCCGTCCTGCTCGGCTGTGTCCTGGCTGGACGGAGGCAATTTGGATCGGAGCCGGAAGCGGCGGGACGGAGCAGAAGGCTGCGGGCAGGATGAGGAGACGGAGGACACGGTGGAGCTGGAATCCACAGAGTCGAGCGAGTCAGGTTGTCTCTGTAGTGTCCGCCTGCTTTTCCCCTGGGATTTCTTGGGCCGAGTGGCAGCTGACGTGGGGCCTTT
>TU208361
gcgcacacacacacacacacaagcacacacacacctgcataaCAGAACCAGAACCCAGTGCTGAGGCAGGACTGTGCACTGCACTCAGTGCGACCCACAGCGAGAGATCAGAAGTTCAAACACTGTATGAGATAATACGCTTTAACACAATGGGATGTTTTTCacctgtgtgtaaatgtgaaaaacagaCTTTCTTCAGTAAACAGCATGTGGGCCTTTTGCCTGAATACCACAATGTCATATACCAAACCGCTGGAAATGTTCAGGTAggtgaggaaaataaaaaaaaaaaaaaaaaaaaaaaaacaccaaaaaacagTGCAGTGACATTCaccatcatattaatgagaaatccaacattcAGTTAATGGAGACGTTGAAGCAAACACTGGACTCGAAGCTGCAGCTACACAACACAGTTgcgctgagttacagcagagacttgaCTCAGCAAGTTGCAATCTACAAGATGACGAGTACGATGGTGTTGACAGTGATATTAGCAGGAAAGTTGAAGcgttggaa

Function

symbol description
myo9a Predicted to enable GTPase activator activity. Involved in cell junction assembly and establishment of epithelial cell apical/basal polarity. Predicted to be located in axonal growth cone. Predicted to be part of myosin complex. Implicated in congenital myasthenic syndrome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208359 True 2266 lncRNA 0.43 2 4919768 4922054
TU208360 False 1706 lncRNA 0.45 3 4916775 4922054
TU208361 False 525 lncRNA 0.42 3 4912078 4960526

Neighbor

gene id symbol gene type direction distance location
rps17 rps17,LOC108271026,LOC100699764 coding upstream 175674 4730499 ~ 4736404 (+)
csnk1g1 csnk1g1,LOC108271196,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding upstream 186328 4692533 ~ 4725750 (+)
fadd NA coding upstream 260986 4647397 ~ 4651092 (+)
ccnd1 ccnd1,LOC107686820,LOC107584710,LOC107730086,LOC107727103,LOC107679730 coding upstream 420703 4486552 ~ 4491375 (+)
tpcn2 tpcn2,LOC107584739 coding upstream 589389 4302271 ~ 4322689 (+)
senp8 senp8,LOC107686835,LOC107594499,LOC107738916,LOC107730148 coding downstream 72713 5033239 ~ 5035405 (+)
rxfp3.3a2 LOC108270660 coding downstream 347495 5308021 ~ 5310159 (+)
drd4b drd4b,LOC108270559,LOC108412785 coding downstream 353941 5314467 ~ 5355290 (+)
LOC113536448 psmd13,LOC108270933,LOC108412783 coding downstream 406335 5366861 ~ 5377891 (+)
si:ch211-146m13.3 si:ch211-146m13.3,LOC108270934,LOC108412786,LOC107663021,LOC107686840,LOC107561441,LOC107730175,LOC107600348,LOC107712612 coding downstream 419385 5379911 ~ 5388579 (+)
G176041 NA non-coding upstream 18721 4893142 ~ 4893357 (+)
G175999 NA non-coding upstream 51135 4787742 ~ 4860943 (+)
G176008 NA non-coding upstream 73707 4813512 ~ 4838371 (+)
G175991 NA non-coding upstream 172412 4737251 ~ 4739666 (+)
G175988 NA non-coding upstream 183031 4694919 ~ 4729047 (+)
G176384 NA non-coding downstream 460361 5420887 ~ 5424095 (+)
G176401 NA non-coding downstream 511286 5471812 ~ 5568100 (+)
G176406 LOC108270509 non-coding downstream 545244 5505770 ~ 5509854 (+)
G176430 NA non-coding downstream 642130 5602656 ~ 5614328 (+)
G176469 NA non-coding downstream 716680 5677206 ~ 5690860 (+)
G175977 pacsin3 other upstream 250942 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 266880 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 612711 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 1253788 3647355 ~ 3658290 (+)
pth1b NA other upstream 1264963 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 2161859 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 2307305 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 3282829 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 3284426 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 3287490 8248016 ~ 8248088 (+)

Expression


Co-expression Network