G176336


Basic Information

Item Value
gene id G176336
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5110114 ~ 5113268 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208726
CTAATTTGAACcaatagaattgagaaaatctgaaTTCAGATGTTGCTTGTCGTGTTTTAGCTTGCCACTgcattgaaggaaaaaaaaaatgtctattgCGTTGCATGAGTGCAAAACAATGGTAACTGTAGCAGAAGTGTATTGTTTTGTTCCTAACGCTTGGAACAAAGTGGATAGGTGGCGTTTAACAGGCGGGAGGTACCGAGTTTCATTCTCGTCAGTCACCTTCTGGAGAAAAGTGGTTTAAATAGGCTCTGTGGCGAGAGATTGGAGTTTCAGGTTATTCACCCTGCACCATTTTAAATTCCTCAGCATCGCCTACTCTCGCTGATCACAGGCACAGCTCACAAAGTCAGAGTGTGAATCGCAGTCATTAGTGTACAGAGGTGACACTACACAGCCCCCCGCTCCCCGCGACTGGGAGTTGTTAATCTACACAAGGCAAAAAGCGATCGTCTTGTCCTACAGTCTTGCTGCTAAGAGCGCATTAAAGCCAGAGCTGTgatgtattaataataagtgCACAGGCCTCGAGGTGTTGCCACACTGCGTGGAGGAAGAGCACAAACCCGTTGACCTGCAAAGCAAATTCATACGAGTCTAAAACAATATCTTTCAGCGGTGTGATTAATTGTGGAGGTGAGTGCCTGTAAGGGCCTGTAATTATTACCACAGTGTGCGTTTGGTTTCTTAGATACGAGGACAATAAAAGTGCTCAAATTTTCATCAGCTCAAAGACAAACGCTGAACCAGGAATCAGATCTGATTCTGTAGCCTCTCTGCTTGTTTTCCTAAAACTGCacacctgaagtgttttattccttacatgcaAAGCCCACATTCTGTCTCTTCTTTGCAGCTTTGCTTCACAGTTTGCTTGTGCGGTTTGGAGAAGTCCAGTCCTTGAGGTGTATAAAAATTCAGTGAATGTTTTAGAAAAGGTATAAATATTCTGTTGTCAAGGAAACAGTGTTGTGTTTGGACATTGTGCTATTGTGTGTGGTAACACAGCCTAACTAATGCAGATCACATTTCAGTAAACGGGTAATGACCTTTAAAAATAACTCGATATAGAGATTCAGGAAAAGTCTTCAAGTCCGAGTGAAAAGCTCGCAAAGTTGCAGTTTATAATTAGCTTTAGCCTTTGTACTGTTGAAGTCTTCCGAAGCCTTGTTACTACAGTATTCAGTGACTGAGTTcttatttgtcttttatttctccgtctgttgaattctcaaatctgattagtcagaaggtgttgattagttttctctaACAGCGGCTCTGAGAGGAGAGGAATGCCGGCTGTagttcaaatcacaggtctatattaatgcgcttgatCTAATaggctatcgtttctatagtaacaggtcatTCACAGGGGGTTGGATGGTGGACACTGGTGGCTGGTGtcgctactgaagagctctttttaacggTTATAACATATTTGTGTAACTTATCTGGAGCTGTCTAGGCTATCTGGAAGTAATGGCCTGTATAGTTTAATCTGATGGGTTGTGCAGGTTGGgtcctctggtgttcaaacagcgCAGTTGCATTAGACGCaaaattaatagaatgctgatatCGCACATTTCCACGATGCACGTCGTCACATTTTTGCGTCATGGCATCGTTACACACTTACGGCTGACGTTTTGTTGTTTGCTAGCATGGATGTAAGGTCAAAAGAAAACCGATCAACTTGTCAGTCCACACGCAGGGTGTAGTTATCATGTCGTCTCATGCCCCGGAACGAGCTCGAGCACCATTTATACAAGTTAGACACTTTAAAAAGTAGCTGAAATCTCTCAGGCTTGTGATTTAGCTTCAGGCAGTTGTTAACATTTCATATCACAGAACTCTCGGACAGAGAGATTTATTTTCCCTTCATTTGATCAGCTTACGTTCTGACCTTTAGATCAGACATGGTAATTTATAGACGGTCTCATTTTTGGTAAAGGAACTTTTCAGTCTTCCTCTAAATCTTTCtttattccctctctctttcaaaTGGCTGAGCAGTGAAAAGGCCTGAGGTTAACAAGTCTGCTGCTGTGTTTGACATCTTTGTGCAGTGGATTGAATTACTCTTCCCTTCATGAGGTTAGTGTCGCAGGAAAGATTGCTTTAAGAAGATTAGACGGTATTGTGGAAGATTTCTCTGTTGAAATCTCGCCTTTAGTTCATGTTTGCGGGTTCTAGAGCGTTCTTTTTACCCCGTTTTATAATTTGTCCCAATTTAAAAACAGGACTATGTGATTGAAGCAGAGAGGACTCGCGCATTAGGAGTTATTCTGGTGGGATTGATGCACGGATGGATGGAAAGTGGCAGAAAGCTTTCCTCAGCAAGTCTCTGTTAGGACACGTTATTCCAGCTGCATCATGGTGACTGATCAGATGCGAATATGAAGCAAGGTCCTGATTTCAAAAGGcttctttttcttccatttGAGTGAATATAAAACAAAGCTGCAAgatatgttaaaaatgtttggtATAATGATGTTTCACAGCTTTCTGCTCATTTAGTTTCCCTGACGCATCCTCAACATTCACTAATTAGGTCCAAGGACTGATTTTAGGCTTCCTGCCAGGTTTGTTCAGAATATCTGACCCTgaacatttgtcatttttaatttatcacaCATTTCATTAATTTGCCATACTGAACGTAAAATGGCTCTGACTAACAGCTTCCGTGAACATTTAACTAGAGCGGGATATAACGCGAAGATGTAATATCGATATCGTGTTAAACTCCAACAATTCAGTTTTTTGCAttagtatttttataacaacTGTAAACAGCTTGGAAGCAGCAGATTAGATTCAGATTGTAAAATGTTGCTTTTTATTGTCTGTTTACTTTCGTAGACTTGTTCACTGGCGTGTATATCATGCATCATAGAAGCGTatcgtgatgtgatatttttgtcatatcagcCACCCATATGTTAGAcatttgatattaaaatgtaGCAGAAAGTAGGGCTGGGCAATTTGATCATGTGATaccaatatcatgataaattatgtaacAATACACTTTTGTTGTGATGTGATATGATTtcagaagcagctgatttgacgATAAAATTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208726 True 3110 lncRNA 0.40 2 5110114 5113268

Neighbor

gene id symbol gene type direction distance location
gramd2aa gramd2,LOC108270961,LOC107748265,LOC106562775 coding downstream 35812 5047351 ~ 5074302 (-)
myo9aa myo9a coding downstream 77220 4923363 ~ 5032894 (-)
scamp2l LOC108271388 coding downstream 190855 4907933 ~ 4919259 (-)
neo1a LOC108271025,LOC108434571 coding downstream 248486 4738083 ~ 4861628 (-)
pacsin3 pacsin3,LOC107686823,LOC107679714 coding downstream 421536 4656606 ~ 4688578 (-)
chrna7a chrna7,LOC108270560,LOC108434558,LOC107748270,LOC107679711,LOC107686877 coding upstream 85875 5199143 ~ 5220239 (-)
LOC113536575 adamts7 coding upstream 116058 5229326 ~ 5302351 (-)
trnai-uau_1 NA coding upstream 177234 5290502 ~ 5290594 (-)
trnai-uau_2 NA coding upstream 200894 5314162 ~ 5314254 (-)
cdhr5a LOC108270552,LOC108412775 coding upstream 205084 5318352 ~ 5325458 (-)
G176029 NA non-coding downstream 262973 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 269421 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 373698 4732382 ~ 4736416 (-)
G175967 NA non-coding downstream 477329 4630348 ~ 4632785 (-)
G175963 NA non-coding downstream 487127 4622128 ~ 4622987 (-)
G176354 NA non-coding upstream 191346 5304614 ~ 5407099 (-)
G176556 NA non-coding upstream 518558 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 969560 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 1058930 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 1071067 6184335 ~ 6188288 (-)
G176307 NA other downstream 29219 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 605785 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1113661 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1200221 3851847 ~ 3909893 (-)
serf2 NA other downstream 1528127 3549865 ~ 3581987 (-)
trip4 trip4 other upstream 26342 5139610 ~ 5196818 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 583112 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1743487 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2367154 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2467166 7580434 ~ 7588815 (-)

Expression


Co-expression Network