G176354


Basic Information

Item Value
gene id G176354
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5304614 ~ 5407099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208744
cacgaTCCTAAGTGTCCGTATCATATTTAGATTAATTGGGCTTAATTTAGTTCGCTGGCCTACATCATGCTCATGGCTAGGCTTAAATTAGGTCCCATAAGTGATCCAGTCTCTCAATAGTAGCACAGCTGTCATTATTTATCCAAAGTTAAAAATACACACCCACATGTCAGACTGGTTAAAAAGTATCTCTTATTTAATATATCATATTTTCAACAGATCGCAGAAAAGCCTCCAtacccaataataataataatactataattTAGAATTTGCACTCATTTCAGCAGGGCAAATTAACTGACCATGACAATCTTTCCAGCATACAATGCAACCTGGATCCTGAGCCCACAGCAGTCTTGTAGAGCCTGAGAGTCACAGGGAAAGAGCAGGCATTCTTTCCCAACCACAATATATAATCACTTATAattctgtaattttttttttttttttttttttttttttaaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208744 True 470 lncRNA 0.35 2 5304614 5407099

Neighbor

gene id symbol gene type direction distance location
LOC113536575 adamts7 coding downstream 2263 5229326 ~ 5302351 (-)
trnai-uau_1 NA coding downstream 14020 5290502 ~ 5290594 (-)
chrna7a chrna7,LOC108270560,LOC108434558,LOC107748270,LOC107679711,LOC107686877 coding downstream 84375 5199143 ~ 5220239 (-)
znf609b LOC108271255,LOC108434576,LOC107679726,LOC107748266,LOC107738902 coding downstream 171064 5081652 ~ 5133550 (-)
gramd2aa gramd2,LOC108270961,LOC107748265,LOC106562775 coding downstream 230312 5047351 ~ 5074302 (-)
LOC113536772 LOC108270937,LOC108412780,LOC107730181,LOC107561442,LOC562097,LOC107663023,LOC106562562,LOC108250636 coding upstream 497 5407596 ~ 5418681 (-)
nqo1 nqo1 coding upstream 12897 5419996 ~ 5446722 (-)
LOC113536779 LOC108271307 coding upstream 27568 5434667 ~ 5452341 (-)
dpep1 dpep1,LOC107730179 coding upstream 58574 5465673 ~ 5481287 (-)
hp LOC108270509 coding upstream 98818 5505917 ~ 5509942 (-)
G176336 NA non-coding downstream 191346 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 457473 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 463921 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 568198 4732382 ~ 4736416 (-)
G175967 NA non-coding downstream 671829 4630348 ~ 4632785 (-)
G176556 NA non-coding upstream 224727 5631826 ~ 5715020 (-)
G176817 NA non-coding upstream 675729 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 765099 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 777236 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 853698 6260797 ~ 6261240 (-)
trip4 trip4 other downstream 107796 5139610 ~ 5196818 (-)
G176307 NA other downstream 223719 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 800285 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1308161 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1394721 3851847 ~ 3909893 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other upstream 289281 5696380 ~ 5708304 (-)
LOC113536608 LOC108270551 other upstream 1449656 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 2073323 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 2173335 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 2268817 7675916 ~ 7764430 (-)

Expression


Co-expression Network