G176556


Basic Information

Item Value
gene id G176556
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 5631826 ~ 5715020 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU208989
gaaaaaccatgcattaagagccggggggtgaaacattttttgaatttgaagatcagggtaaatttaacttattttgtcttctgggaaacatgtaactatcttctgtagcctctgaagggcagtactaaatgacaaaatatgatatttaggcaaaataagaaaaatgtacacacctccattctgttcaaaagttttcaccccccggctcttaatgcatggtttttccttctggagcatcagtgagcgtttgaaccttctgtaatagttgcatatgagtccctcagttgtcctcagtgtcaaaagatggatctcaaaatcatacagtcattgttggaaagggttcaaatacacaaaaatgctggaaaaccaaagaatttgtgggacctgaaggatttttctgaagaacagcaggcagtttaactgttcaggacaaacaagggactcttgaacaactatcactaaacaaaaaacacagctgtggatcattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208989 True 488 lncRNA 0.38 2 5631826 5715020

Neighbor

gene id symbol gene type direction distance location
ist1 ist1,LOC107705324,LOC107730168,LOC107600347 coding downstream 58650 5566660 ~ 5573176 (-)
dhodh dhodh,LOC107730177 coding downstream 86305 5537052 ~ 5545521 (-)
hp LOC108270509 coding downstream 121884 5505917 ~ 5509942 (-)
dpep1 dpep1,LOC107730179 coding downstream 150539 5465673 ~ 5481287 (-)
LOC113536779 LOC108271307 coding downstream 179485 5434667 ~ 5452341 (-)
LOC113536391 eif4a2,LOC107568626,LOC108267852,LOC107593804,LOC105889495 coding upstream 58537 5773557 ~ 5781153 (-)
plaat1 LOC108270879,LOC108435900,LOC107713876,LOC104947671 coding upstream 66205 5781225 ~ 5786544 (-)
srsf11 srsf11,LOC103035453 coding upstream 115731 5830751 ~ 5843843 (-)
rbbp9 rbbp9 coding upstream 139357 5854377 ~ 5858326 (-)
LOC113536410 pcdh20 coding upstream 209189 5924209 ~ 5929129 (-)
G176354 NA non-coding downstream 224727 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 518558 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 784685 4840748 ~ 4847141 (-)
G176028 NA non-coding downstream 791133 4839988 ~ 4840693 (-)
G176015 NA non-coding downstream 895410 4732382 ~ 4736416 (-)
G176817 NA non-coding upstream 367808 6082828 ~ 6167802 (-)
G176816 LOC108271104 non-coding upstream 457178 6172198 ~ 6176354 (-)
G176832 NA non-coding upstream 469315 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 545777 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 642554 6357574 ~ 6358087 (-)
trip4 trip4 other downstream 435008 5139610 ~ 5196818 (-)
G176307 NA other downstream 550931 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1127497 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 1635373 3992726 ~ 3996453 (-)
mical2a mical2 other downstream 1721933 3851847 ~ 3909893 (-)
LOC113536608 LOC108270551 other upstream 1141735 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1765402 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1865414 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1960896 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2529629 8244649 ~ 8244721 (-)

Expression


Co-expression Network