G176746


Basic Information

Item Value
gene id G176746
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6070947 ~ 6075427 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209210
CCTCAATTTCACATCATAGACTGATTTTAGTTCCTGATCGTATATTAGTTCTTCTTTCACCAAAGAACTGTGGAATGTAAGAAAAAATTAGCTAATGCTAAATAACAACAGCTTCATTCTagcaatgttagctagcatggtAATAACTGATcatacaaactagctgaatgtTAATAACTAGCTGTCGCAAGTGTACATAGCAGCAGATACATTGAAGTGATGGTATAAGGGCTCATTATCATATCTCTcatatttgttaatatttagaTTTGTTAGGAGGTCAACTCCTTGAAGCCGTCTAATGCTAAAAAGTCGCCTTATGAATCTACAAATATATGAGTGTAGAGAAATGAAGTTATCcTAGGGAATAGAAACATTACTGGGAATGAAAACGTTGTAGTAAAAAGTGCTTAACCgcttaataatgttatttttctgttgaAGTATGATTTCAAGTACAACCTAAACCTAAACATTTTCCCATTAGGCTTAAATTCCTGTCCAGAATTGGTCACATCTTAACATGAGATAGCAGCGTTTTTGAAAATgaggcaaagaaaagaacatcCGTGTAGAAAGTATTCTTCCTGCGATTCTGGATCATGCagttttggattttatttttacattacgCTTCCTATAAGCAGAGTAGGCTATCATATGTAAAGAATGCTATTAACCATACTTTTATTTCGTTCTAGCAGGTTTCCAGCTGAAGAGGTGGTCATGGAATGCTGGAGTAGGAAAGTTTCTGTTCGGAACgaactaaaatgaaaaataaatcatttctaatcCCTGGCAGAAAGAagattttcttttgaaatgtagtgAGTCAATAGATCAAGCCTAGTTTCAAAGACAGTTAAACCTCTTTGGTGTTTATCTAGgtgtttatattttaacatCAACACTGCAAATCGTTCTGGCACCACCAGGATGACAATTCTGATTTACATTTGAGTCGCTTCTACCGGCTTCATCCACAAACTCTCGGAAAAAACAAGAGacacagtttttttaataaagatcgACATAAGCTGCGTATTTTCATGACAGGTTCCTCTGTAGCCCCCTTTTTATTCACACTGTAGCCCCTGAATGTGCAAGCTCATAAACCTGTCTCGCCACACCCTAATCTCTGGCAGCCAGCGAGACGCAGGGCTGGAATTGAATATATCCCATTTGGACCTGGCCTCCATATGCTGAAAAACACGCAGCTCAGCAGCCAGGTCTGGATGTCATTATACTCCCACTCGCACTCCTACTCTTATACACCATCTCCTCCCCCCTTCTGGCTGGCTCACTTTAACTCTCAAACACTTTTCCCAATCCTCGTacctttcctcctcctctttttctgCATACTTCTTCCTATAAGAAAGAAGAAGCTCTGGTTCCTGATCCGATATTTTTGCCTCAGTGTCATTGGCCTGGAGGACACGAGCGCTGCAGTAGTGCACATTAATCAGATGCTAAAAGGGGCAGAATGACCACAGCGGATGAGAAATGAGCAGAGGAAAAATGAGCGCTAGAGGAAGtcgttttatacatttatacgcttattcatttggcagaaaGTAATCTAAGCAGGGAGCTGAGGGTCAGGGAGCTGAGGGTcaggggcccaacagtggctcAGTGAAATGTACCACCATCATACATGCCTAAATGGTTTTCAGAAGAGGCTAACACTGTCACGCATGACAGACGTGACGAGATGCAGAGCAAACCCGCTGGCAAACAGCCAGTCTAGCAGTTTATTATACTGTGTGTCCATGCTATagctgatacacacactgatgatgatgatgatgatgatgatgaaaagcAAGATATTAGGAATGAgtcaatagatttttttaatttgctcatTCCAGAAAATCTAACTGTATATTAGTCTTTCAactattaattaaatgtttttcaatGTAAGAACTAAAAGTGTCAAAACCACTTTAACAAAGGTACTTGtagtatgtttgtatgtatgtatgcctTTCTGCGGTTAAAAATTCCTAAAAAGTACCCTTTTTGTTTTAAGCTTCCTTATACCACAATGTATCACAATCGAATCAcatgtttaaattaatgcactcgttctaatacgttaacGTTTCTATAATAAAGGTTAGTTCAGAGGGACTTTATTATTCAATCTACgttgaataatgaatgaattaaaaatgttttttttttattcaactaCAAAAACTTCTAatcgctgatatggtgaagtttttcaGTAAGGAGACGTTTGTGTAAGATTTAGGGGAGGCTGcggtgtcagcactttgaacaatcagaagtaaagctATTCCTCTGAACAGCAAACATGACTCcataacataacaagctgtagtttttcattaaattcatattaacctcaagagaaagtaagggaatgactgtttatagctgtttatacTAAAGGAATGAATTTCAgatattccacaatattaaacgtaactataaatggataaaaagtatcacatgttgttctttaattaattacgTTATGATGTAACAATGATCACTGCGCTGCAATACTTTTGGGAAACTCAAGGGGccatgcagtaaaaaaaaaaaaaaaaactttaaaaaacattttttttttgtgtgtgtgttctgagactCATCTCTGACCAAGGGGTTCTCAATTTCCAGATTTTGATAAACCTTGGTTTGCAGTTAATGAGTAATCTTGCTCAAATCAACTCAGGTCAATCTTTAACCATGATGAATCCCAGCTTCACtggtttgtttaaatataaaagaagGTGTATTGCAATTTGCATtataatcacaatattttatttttgtccatttcgTACTACTCCATGCCTATCCATCATGCACTCGCATGCCTTTTTAGGAACAGCGCTTCCTGCTTCACTCATGCAGAATGATTATGGAGGAAAAGACGAGATAGGCTGAGTGAGGTCAGTGACCTGGGAAGTGTATGTGTCACTTCGAGAAGACCTCATCGTTTCCAGAGCTGCGTCAGTTCAACAGCGTCATTGAGAAAACTCAGGTAAACACAGCTTTAATATCTTTATTATCAGCTATTGTTGAAGAACGtggcatgatgttataggaaaataatcaatgacagcatggtgtgatgaagctgagttactgttaccagatcgaaattaattattttgctataacaagacattccaaagtgttttgttcctcttataccacagcaattacgctttttttttatttattaaagaatgtcatagtttttatcagtttattgttacataacttaatgcaagtgataacatgaattaatttgtttaacagCTTCTTTTTTCTCACTGCAAGGGAAGACTTTCCCAAGgaaggttacagctttacctctgactgttgcaaagcgctgacactgaagactccttccaaaaatgtttaaaaaagtctcctcacagaaaacttcaaagtagttagctgttactatagaaaagatatttaacatatttagaacaagcacataaatataaacctgcgatttgccctacagctggaactactgttagagctgctgttccagaaaattaatcaatactttccgaccaatcaggattgagaattcagcagcgctgtggtataaagtgagTTAACGCTGCTCACTTCTGCACATCTGTGAGATATGAGCACATCATTTGTGATCCTTGGGGAAACTGGAAAGCACTTAAGGTTGCACAAAAACTGTTCTATGATACACTGTGGATATGGTGCAACTGTAAAAACAGCACCAGCGTTGAGGCCAACAGGGCAAGTCACTGTGATGAGAAAAACAACTGGGaatgtgatggagagagagagagagagagagagagagagattgcttTGTCAAATCAGAATTACAGACATAGACTGCAGACCAGACTTTAAATCCTGTCCTTGAAGGACTTTGTGGAAAATTTTTTATTCCTGCACGTTGTTGTGCTGGCGCAACGAACTAAACGAAGGCAGATGAATATTAGCACTCATGACTGCTCGAACATGTGTTCCATCATTACCAAATTATGAAAGATAATTACATTGACAAGCTCAACAGTCCTCATGCAAGGTACCGTCTTGAGTACAATATGAAATGTCATatgtaaaacacttggggaaatgttgttatgggaaaataatgaatttcgGGTGTTGTAACGAAGtatagttactgttaccatcttgttttattcctcttacaccacagcaatttgccagtggttacatttctttatttattaaaaaaatgacacaccATGTTTTTATCCGTTGAttgttacattttacattttggaatgtctgcaaaactaGTTCCTGTAATTATTCGCATTATAGCAGCACCAgcctctgctcttttttttttactctgttgaagttaataataaataaacacttctgtCAAGAAGACTTTGTGTTGGAAAatttagttacagctttacaaagagctga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209210 True 4458 lncRNA 0.37 2 6070947 6075427

Neighbor

gene id symbol gene type direction distance location
tdrd3 tdrd3,LOC107557396 coding upstream 182104 5867064 ~ 5888843 (+)
zgc:194981 NA coding upstream 204987 5861430 ~ 5865960 (+)
sirt7 sirt7 coding upstream 217121 5845459 ~ 5853826 (+)
ankrd13c ankrd13c,LOC102791519,LOC106573859 coding upstream 242551 5788447 ~ 5828396 (+)
rfc4 rfc4 coding upstream 298031 5763807 ~ 5772916 (+)
foxg1b LOC108270571 coding downstream 41848 6117275 ~ 6119629 (+)
LOC113536615 LOC108271104 coding downstream 92051 6167478 ~ 6174101 (+)
LOC113536616 LOC108271104 coding downstream 103005 6178432 ~ 6182676 (+)
LOC113536774 LOC108271104 coding downstream 112527 6187954 ~ 6191988 (+)
vipb LOC108270647 coding downstream 126422 6201849 ~ 6205705 (+)
G176700 NA non-coding upstream 118792 5951814 ~ 5952155 (+)
G176608 NA non-coding upstream 213705 5855525 ~ 5857242 (+)
G176596 NA non-coding upstream 255841 5814595 ~ 5815106 (+)
G176469 NA non-coding upstream 380087 5677206 ~ 5690860 (+)
G176430 NA non-coding upstream 456619 5602656 ~ 5614328 (+)
LOC117598391 NA non-coding downstream 18776 6094203 ~ 6100027 (+)
G176964 NA non-coding downstream 479167 6554594 ~ 6555007 (+)
G177159 NA non-coding downstream 783877 6859304 ~ 6860230 (+)
LOC113536609 NA non-coding downstream 788398 6863825 ~ 6875047 (+)
G177165 NA non-coding downstream 810151 6885578 ~ 6886403 (+)
G175977 pacsin3 other upstream 1409811 4656605 ~ 4661136 (+)
ano1a ano1 other upstream 1425749 4613406 ~ 4645198 (+)
nadsyn1 nadsyn1,LOC107727102,LOC107730094,LOC107686870,LOC107679728 other upstream 1771580 4281244 ~ 4299367 (+)
btbd10b btbd10,btbd10b,LOC107709927,LOC107727107 other upstream 2412657 3647355 ~ 3658290 (+)
pth1b NA other upstream 2423832 3645743 ~ 3647115 (+)
LOC113536390 LOC108271079 other downstream 1046958 7122385 ~ 7132468 (+)
rpl37a rpl37a,RPL37A,rl37a,zgc:171772,LOC107564751,LOC107567628 other downstream 1192404 7267831 ~ 7271320 (+)
trnar-ucg_6 NA other downstream 2167928 8243355 ~ 8243648 (+)
trnar-acg_6 NA other downstream 2169525 8244952 ~ 8245024 (+)
trnar-ucg_8 NA other downstream 2172589 8248016 ~ 8248088 (+)

Expression


Co-expression Network