G176816 (LOC108271104)


Basic Information

Item Value
gene id G176816
gene name LOC108271104
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 6172198 ~ 6176354 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU209304
CCACATTcattttgaaattaatttttcacatgtagggcatgtggttttatttttttacacgtGTGTCACATATTGTTCACATGGTGTCGTGGAAAAACCTATGCTCAcatctgaaatgtgtgtgattttcgCATAAGGGAAAAACAACACCCAATATCTATTACTGCAGTAATATATCTAcaaatatctgtctgtcttcagCTACATTCTGTATTTATCAAGCTAATTTGCATCATGACAGACAGCTATGTCTTGTATCATACAAGATAGACAATAGCTATGTTAACtaccaaaattaaaaatgattctttcttgtactttaacataataataattaatgataataaaacatATCCAAAGTTTAGATGAGTTTATTAGTCAGAAAATGGCATGCAAAATATATACCtcctatattaaaaataaaagtagagGTAAAATTGGGTTTAAAAAAAGGGTACTGCTACTGCTTAGGtctaaaatattacacaaaattgTTGCTGATtcgccataacattaaaaccactgacaggtaaTCATTAATTATCAGGTTAcattggcacctgtcaaggggtgggatatattagacagcaagtgaacagtcagttcttgaagttgatgtattggaagcaggaaaaatgggcaagcttaAGGATCTGAgtaactttgacaagggccacaTTGATGGGGCCAGATGACTGGGCTAGACAGATTGACGGGGCTAGACAAATTGAagggctagacgactgggtcagagcatctccaaaacggcaggtcttgtgggatgttcccgatatgtagtggttagtacctaccaaaagtagtccaaggaaggacaaccggtgaaccgatGACAGGGTCATGAGCACCCAAGGCTGATTGATGCGTTTggagagcgaaggctagcccgtctggtccgatcccacagaagggCTACTGTtaacacaaattgctgaaaaagattaacactggctatgatagaaaggtgtgagaacacacagagcattgcagtttgctgcatatggggctgctttgctgcagaccagtcagagtgcctatactgacccctgtccaccgccaacagagcctacaatgggcatatgagcatcagaacagGACCATGGAGCAACGGAAGAATGTTgcttggtctgatgaatcacattttcttttacatcatgtggacagccaggtgcatgtgtgtcgcttacctggggatgcactatgggaagaaggcaagccaccGGAGTCAGTGTGATGCGCTGGCCATCTGACaagtaccacctacctaaacattgctgcagaccaagtacaccccttcatggcaacggtattcttaatggcagtggtcttttcagcaggataatgcaccctgccacactgcaaaaattgtccAGGAATGGGTTGCAGAGCATGACTAAGagttcagtgtgttgatttggcctcctaATTCCCCAGATcccaatctgatcaagcatctgtgtgatgtgctggacaaacaagtctgatccatggaggccccaccatgcaacttacaggacttaaaggatctgctgctaatgttttGGTGCCAGGTactacagcacaccttcagaggactcgtggagtccatgcctcgacaggtcagagttgttttggcagcacaagggggatctacacaatattgggcaggtggttttaatgttattgctgaTTGGTATATTTACAGAATACTAAATTTTATTGTCTGTGCAGTGACAATAAAGTAAATTGTATCTTATACACaaatacagttattatttaGATGTCATCTTTGTTAGagtcttttttatttgattagaGTATTTGTGGAGAAAATGTCTGAGATGTGCTGCATCTGTCACCATCAGCCATCTTGGatttaagggccttgctcagtggcccaacagtggcagcttggcagtgctggggattgaacccCCAATCTGAttagtaacccagagccttaaccattgagccaccactgcccagaGGTGGTCGGGAGGTGATTCCCgtattatatacagtcaggtacataaatattagaatattgACCGTTCTAAGTCACACAGTATGTTGGAGTTAAATTaggtaatgtactgtatatgagctcaaagtgcaatGTATTAATTGTTTATGCCTAAAAATCACTGTTTAGAAAagagttttaaaacaaaaacagcccTGTTTCacagtgtttaatatttcagattacTGACAGTACTGCTCGTATTTAAGCTTGGCTCCCAGTTTGGTTCCTGTTAGTTTCTTCTTGAACTCTTCATCCATCTGCTTACTCTGAGCCTCGCTGAAGTGATTCTTCCAGTCTCCTACCTCACCTTTTCCGGAAAAAGACATTGCCAAACTTTCCATGAGAAGTTTTAGAGCTCGACTGCATGGCAGTGAATGTGCTCTCTCCGGCAATCACCTTGACCTGTTCATCTGTCAGAGAGAAGCTGAAGAAGTCTGTGATTTTCTTTACACCCTCAAGTAGGTTCtactttagTTCCTCATAAGTGACAATTAACACATTAGGGTCATCCATGTGTTTCTCCCAGCCCAGGGCGTGGTCAAAATATGAACCCCAGCccact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU209304 True 2585 lncRNA 0.42 4 6172198 6176354

Neighbor

gene id symbol gene type direction distance location
LOC113536415 acyp2,LOC105896825 coding downstream 62826 6100029 ~ 6109372 (-)
LOC113536414 c10h2orf73 coding downstream 77420 6085672 ~ 6094778 (-)
sptbn1 sptbn1,LOC108270927,LOC108442064 coding downstream 87391 6001691 ~ 6084807 (-)
eml6 eml6,LOC107597181 coding downstream 174061 5949048 ~ 5998137 (-)
LOC113536410 pcdh20 coding downstream 243069 5924209 ~ 5929129 (-)
LOC113536569 LOC108271057,LOC108442067,LOC107741992,LOC107680499,LOC107657964 coding upstream 50740 6227094 ~ 6296876 (-)
galnt18b galnt18,galnt18b,LOC107584699,LOC107686803,LOC106587200 coding upstream 181783 6358137 ~ 6461826 (-)
ctr9 ctr9 coding upstream 379365 6555719 ~ 6567757 (-)
ampd3a ampd3,ampd3a,LOC108433033 coding upstream 445550 6621904 ~ 6643123 (-)
adma adm coding upstream 472394 6648748 ~ 6651135 (-)
G176817 NA non-coding downstream 4396 6082828 ~ 6167802 (-)
G176556 NA non-coding downstream 457178 5631826 ~ 5715020 (-)
G176354 NA non-coding downstream 765099 5304614 ~ 5407099 (-)
G176336 NA non-coding downstream 1058930 5110114 ~ 5113268 (-)
G176029 NA non-coding downstream 1325057 4840748 ~ 4847141 (-)
G176832 NA non-coding upstream 7981 6184335 ~ 6188288 (-)
G176855 NA non-coding upstream 84443 6260797 ~ 6261240 (-)
G176938 NA non-coding upstream 181220 6357574 ~ 6358087 (-)
G176959 NA non-coding upstream 282012 6458366 ~ 6459631 (-)
G176990 NA non-coding upstream 367645 6543999 ~ 6545070 (-)
LOC113536561 srsf7,LOC107665899,LOC107693014 other downstream 463894 5696380 ~ 5708304 (-)
trip4 trip4 other downstream 975380 5139610 ~ 5196818 (-)
G176307 NA other downstream 1091303 5079817 ~ 5080895 (-)
lto1 oraov1 other downstream 1667869 4498946 ~ 4504329 (-)
bola3 bola3,LOC107686851,LOC107727091 other downstream 2175745 3992726 ~ 3996453 (-)
LOC113536608 LOC108270551 other upstream 680401 6856755 ~ 6861348 (-)
si:dkey-56d12.4 LOC108270721 other upstream 1304068 7480422 ~ 7484117 (-)
si:ch1073-365p7.2 NA other upstream 1404080 7580434 ~ 7588815 (-)
igf1rb LOC108271091 other upstream 1499562 7675916 ~ 7764430 (-)
trnar-ucg_7 NA other upstream 2068295 8244649 ~ 8244721 (-)

Expression


Co-expression Network